Variant report

Variant	rs8023504
Chromosome Location	chr15:72884406-72884407
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:72878242..72880053-chr15:72884097..72885621,2	K562	blood:
2	chr15:72878581..72880330-chr15:72883058..72885916,2	K562	blood:

Variant related genes	Relation type
ENSG00000207690	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs16956956	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16957064	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16957095	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16957189	0.92[EUR][1000 genomes]
rs28429820	0.92[EUR][1000 genomes]
rs28435710	0.92[EUR][1000 genomes]
rs28460872	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28607101	0.92[EUR][1000 genomes]
rs28760097	0.87[EUR][1000 genomes]
rs28766358	0.91[EUR][1000 genomes]
rs35855297	0.87[AMR][1000 genomes]
rs4777517	0.82[EUR][1000 genomes]
rs60702445	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7162856	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7175376	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72735120	0.81[AMR][1000 genomes]
rs72735137	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72735139	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72735141	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72735156	0.83[EUR][1000 genomes]
rs72735160	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72735166	0.83[EUR][1000 genomes]
rs72735170	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72735173	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72735181	0.91[EUR][1000 genomes]
rs72735185	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72735188	1.00[EUR][1000 genomes]
rs72735194	0.92[EUR][1000 genomes]
rs8037282	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534037	chr15:72659210-72964029	Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv2758386	chr15:72819785-73120560	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	esv2760039	chr15:72819785-73120560	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	nsv428307	chr15:72819785-73120560	Strong transcription Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
5	esv3430383	chr15:72821093-73035167	Strong transcription Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72841000-72909000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr15:72870800-72887800	Weak transcription	Right Ventricle	heart
3	chr15:72870800-72896400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr15:72870800-72902200	Weak transcription	Gastric	stomach
5	chr15:72871600-72889400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr15:72874800-72899800	Weak transcription	Fetal Stomach	stomach
7	chr15:72876200-72903400	Weak transcription	Brain Germinal Matrix	brain
8	chr15:72876200-72907800	Weak transcription	Brain Substantia Nigra	brain
9	chr15:72876400-72903800	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr15:72876800-72907600	Weak transcription	Lung	lung
11	chr15:72877600-72889400	Weak transcription	Rectal Smooth Muscle	rectum
12	chr15:72877800-72910000	Weak transcription	Stomach Smooth Muscle	stomach
13	chr15:72878200-72884800	Weak transcription	Primary T cells from cord blood	blood
14	chr15:72878400-72907800	Weak transcription	Left Ventricle	heart
15	chr15:72879800-72906400	Weak transcription	Adipose Nuclei	Adipose
16	chr15:72880000-72892200	Weak transcription	Liver	Liver
17	chr15:72880200-72884600	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr15:72880600-72889800	Weak transcription	Hela-S3	cervix
19	chr15:72881600-72896400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr15:72882000-72884600	Weak transcription	HSMM	muscle
21	chr15:72882000-72887000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr15:72882600-72884600	Enhancers	Osteobl	bone
23	chr15:72882800-72884600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr15:72883000-72884600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr15:72883200-72909000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr15:72884000-72886400	Weak transcription	NH-A	brain
27	chr15:72884000-72893000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr15:72884400-72884600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr15:72884400-72884600	Enhancers	Fetal Kidney	kidney

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