Variant report

Variant	rs2415136
Chromosome Location	chr15:72738565-72738566
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFF	chr15:72738300-72738590	HepG2	liver:	n/a	n/a
2	MAFK	chr15:72738283-72738609	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
ENSG00000271072	TF binding region

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10438370	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10518988	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11072365	0.83[AMR][1000 genomes]
rs11072372	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11072376	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11631125	0.83[AMR][1000 genomes]
rs11638897	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11855682	0.83[AMR][1000 genomes]
rs12439127	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12900846	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12901966	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12908610	0.83[AMR][1000 genomes]
rs16956988	0.84[ASN][1000 genomes]
rs1812842	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1963894	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2415135	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2415137	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2415139	0.84[AMR][1000 genomes]
rs28393893	0.86[EUR][1000 genomes]
rs3842946	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4146286	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4776602	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4776603	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4777512	0.81[AMR][1000 genomes]
rs4777514	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4777516	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4777517	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs57155740	0.84[ASN][1000 genomes]
rs58110372	0.84[ASN][1000 genomes]
rs60106752	0.84[ASN][1000 genomes]
rs60207997	0.84[ASN][1000 genomes]
rs7174307	0.84[ASN][1000 genomes]
rs7175437	0.84[ASN][1000 genomes]
rs7177472	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73442591	0.84[ASN][1000 genomes]
rs73442595	0.84[ASN][1000 genomes]
rs73444703	0.84[ASN][1000 genomes]
rs73444714	0.84[ASN][1000 genomes]
rs73444720	0.84[ASN][1000 genomes]
rs73444723	0.84[ASN][1000 genomes]
rs73444736	0.84[ASN][1000 genomes]
rs73444755	0.84[ASN][1000 genomes]
rs73444759	0.84[ASN][1000 genomes]
rs73444761	0.84[ASN][1000 genomes]
rs73444773	0.84[ASN][1000 genomes]
rs73444774	0.84[ASN][1000 genomes]
rs73444791	0.84[ASN][1000 genomes]
rs73444794	0.84[ASN][1000 genomes]
rs73444798	0.84[ASN][1000 genomes]
rs73444802	0.84[ASN][1000 genomes]
rs73446604	0.84[ASN][1000 genomes]
rs8025088	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8026681	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8035007	0.84[ASN][1000 genomes]
rs8037282	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8038734	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530817	chr15:72350885-72773374	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
2	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
3	nsv534037	chr15:72659210-72964029	Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
4	nsv469704	chr15:72669374-72853927	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
5	nsv482685	chr15:72669374-72853927	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
6	nsv976949	chr15:72737860-72743854	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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