Variant report

Variant	rs60790003
Chromosome Location	chr15:72604049-72604050
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:72597843..72599567-chr15:72603734..72605647,2	K562	blood:
2	chr15:72562979..72565803-chr15:72603139..72606121,2	MCF-7	breast:
3	chr15:72591006..72592967-chr15:72602716..72605488,2	K562	blood:
4	chr15:72603250..72605426-chr15:72611987..72613699,2	MCF-7	breast:
5	chr15:72519045..72520714-chr15:72603580..72606385,2	K562	blood:

Variant related genes	Relation type
ENSG00000273025	Chromatin interaction
ENSG00000140488	Chromatin interaction
ENSG00000137817	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10152588	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12102191	1.00[EUR][1000 genomes]
rs12102206	1.00[EUR][1000 genomes]
rs12911449	0.99[AFR][1000 genomes]
rs16956667	1.00[EUR][1000 genomes]
rs1972692	0.92[ASN][1000 genomes]
rs2009365	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2162236	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28375199	1.00[EUR][1000 genomes]
rs28435418	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28478343	1.00[EUR][1000 genomes]
rs28562796	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28626831	1.00[EUR][1000 genomes]
rs28663089	1.00[EUR][1000 genomes]
rs28712686	0.95[AMR][1000 genomes]
rs2912205	1.00[AFR][1000 genomes]
rs2912216	0.92[ASN][1000 genomes]
rs2912220	0.95[AMR][1000 genomes]
rs2912221	0.95[AMR][1000 genomes]
rs2912223	0.89[AMR][1000 genomes]
rs2912226	1.00[AFR][1000 genomes]
rs2912228	0.92[ASN][1000 genomes]
rs2912229	1.00[AFR][1000 genomes]
rs2959913	0.92[ASN][1000 genomes]
rs2959922	0.95[AMR][1000 genomes]
rs2959925	0.89[AMR][1000 genomes]
rs2959926	0.95[AMR][1000 genomes]
rs59262103	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61100297	1.00[EUR][1000 genomes]
rs6494999	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7175677	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7179350	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7182307	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73438487	0.83[AFR][1000 genomes]
rs73440566	1.00[EUR][1000 genomes]
rs73442522	0.83[ASN][1000 genomes]
rs8031264	0.92[ASN][1000 genomes]
rs8032276	0.92[ASN][1000 genomes]
rs8039839	1.00[EUR][1000 genomes]
rs8192417	1.00[EUR][1000 genomes]
rs8192427	1.00[EUR][1000 genomes]
rs962407	0.83[ASN][1000 genomes]
rs9672916	0.89[AMR][1000 genomes]
rs9972606	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431395	chr15:72266174-72701777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv530817	chr15:72350885-72773374	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
3	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72566000-72611400	Weak transcription	Right Ventricle	heart
2	chr15:72567000-72611800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr15:72578000-72611800	Weak transcription	Ovary	ovary
4	chr15:72582000-72608000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr15:72582000-72611800	Weak transcription	Spleen	Spleen
6	chr15:72583800-72611600	Weak transcription	Stomach Smooth Muscle	stomach
7	chr15:72590200-72604800	Weak transcription	Aorta	Aorta
8	chr15:72590600-72607600	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr15:72595400-72604600	Weak transcription	Lung	lung
10	chr15:72596000-72612400	Weak transcription	Adipose Nuclei	Adipose
11	chr15:72597600-72605800	Weak transcription	Fetal Intestine Small	intestine
12	chr15:72599200-72611400	Weak transcription	Brain Hippocampus Middle	brain
13	chr15:72599200-72611600	Weak transcription	Brain Cingulate Gyrus	brain
14	chr15:72599400-72610800	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr15:72600000-72610400	Weak transcription	Brain Angular Gyrus	brain
16	chr15:72600000-72611600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr15:72600200-72606400	Weak transcription	Brain Anterior Caudate	brain
18	chr15:72600200-72607800	Weak transcription	Fetal Brain Female	brain
19	chr15:72600400-72604200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr15:72602000-72612800	Weak transcription	Placenta Amnion	Placenta Amnion

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