Variant report

Variant	rs36110969
Chromosome Location	chr15:72559237-72559238
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr15:72559140-72559290	HEK293	kidney:	n/a	n/a

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:72521910..72524475-chr15:72556723..72559528,2	MCF-7	breast:
2	chr15:72514333..72526693-chr15:72558323..72568559,52	MCF-7	breast:
3	chr15:72548498..72554612-chr15:72558312..72566000,13	MCF-7	breast:
4	chr15:72545613..72547175-chr15:72558549..72561473,2	MCF-7	breast:
5	chr15:72555118..72559591-chr15:72562362..72567008,6	MCF-7	breast:
6	chr15:72557492..72560161-chr15:72562709..72565959,3	K562	blood:
7	chr15:72521202..72522850-chr15:72557519..72559281,2	K562	blood:
8	chr15:72558362..72561235-chr15:72766233..72767996,2	MCF-7	breast:

No data

Variant related genes	Relation type
PARP6	TF binding region
ENSG00000067225	Chromatin interaction
ENSG00000137817	Chromatin interaction
ENSG00000166233	Chromatin interaction
ENSG00000261423	Chromatin interaction

Extended variants
information (count: 148 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:144)

rs_ID	r²[population]
rs10518987	0.90[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10732234	1.00[AMR][1000 genomes]
rs11632505	0.94[ASN][1000 genomes]
rs12324744	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12899442	0.84[ASN][1000 genomes]
rs12904667	0.84[ASN][1000 genomes]
rs12906356	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12906612	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12907087	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12907377	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12907707	0.94[ASN][1000 genomes]
rs12908241	0.94[ASN][1000 genomes]
rs12908863	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12909590	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12910475	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12911285	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12914208	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12914269	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12914312	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12916039	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12916226	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12916298	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12917402	0.84[ASN][1000 genomes]
rs1426169	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2288257	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2415133	0.81[AFR][1000 genomes]
rs28414926	0.83[AFR][1000 genomes]
rs2912203	0.94[ASN][1000 genomes]
rs2912204	0.94[ASN][1000 genomes]
rs2912215	0.94[ASN][1000 genomes]
rs2912222	0.94[ASN][1000 genomes]
rs2912224	0.94[ASN][1000 genomes]
rs2912225	0.94[ASN][1000 genomes]
rs2957751	0.88[ASN][1000 genomes]
rs2957752	0.94[ASN][1000 genomes]
rs2959916	0.94[ASN][1000 genomes]
rs2959917	0.94[ASN][1000 genomes]
rs2959918	0.94[ASN][1000 genomes]
rs2959919	0.94[ASN][1000 genomes]
rs2959923	0.94[ASN][1000 genomes]
rs2959924	0.94[ASN][1000 genomes]
rs2959927	0.94[ASN][1000 genomes]
rs2959929	0.94[ASN][1000 genomes]
rs2959931	0.94[ASN][1000 genomes]
rs2959933	0.94[ASN][1000 genomes]
rs2959935	0.94[ASN][1000 genomes]
rs2959940	0.84[ASN][1000 genomes]
rs34023258	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs34115124	0.94[ASN][1000 genomes]
rs34211376	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34294127	0.94[ASN][1000 genomes]
rs34346715	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34362323	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs34382909	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34481625	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs34505994	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs34511502	0.94[ASN][1000 genomes]
rs34538801	0.94[ASN][1000 genomes]
rs34638996	1.00[AMR][1000 genomes]
rs34658339	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34677662	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34694253	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs34705283	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs34789424	0.94[ASN][1000 genomes]
rs34815962	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35061524	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs35071085	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs35104697	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35136885	1.00[AMR][1000 genomes]
rs35144689	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs35202897	0.94[ASN][1000 genomes]
rs35259670	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs35285520	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35362359	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs35378070	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35408293	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs35457238	0.94[ASN][1000 genomes]
rs35554838	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs35694406	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs35836103	1.00[AMR][1000 genomes]
rs3743227	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3743228	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3743229	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3759901	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3825949	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4776592	0.84[ASN][1000 genomes]
rs4776593	0.84[ASN][1000 genomes]
rs4777501	0.84[ASN][1000 genomes]
rs55935015	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs57420281	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57595193	0.94[AFR][1000 genomes]
rs57692836	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58352854	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60350471	0.92[AFR][1000 genomes]
rs60600349	0.90[AFR][1000 genomes]
rs61109283	0.81[AFR][1000 genomes]
rs6494994	0.92[AFR][1000 genomes]
rs66608810	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67195650	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71395056	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs71395057	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs71395058	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs71395061	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs71395066	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs71395068	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71395070	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71395074	0.94[ASN][1000 genomes]
rs71397231	0.94[ASN][1000 genomes]
rs71397232	0.94[ASN][1000 genomes]
rs71397233	0.94[ASN][1000 genomes]
rs71411063	0.94[ASN][1000 genomes]
rs7169150	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7174264	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73436365	0.85[AFR][1000 genomes]
rs73436366	0.85[AFR][1000 genomes]
rs73436377	0.85[AFR][1000 genomes]
rs73436397	0.92[AFR][1000 genomes]
rs73436400	0.92[AFR][1000 genomes]
rs73438403	0.90[AFR][1000 genomes]
rs73438405	0.92[AFR][1000 genomes]
rs73438414	0.92[AFR][1000 genomes]
rs73438446	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73438458	0.96[AFR][1000 genomes]
rs73438466	0.85[AFR][1000 genomes]
rs73438476	0.82[AFR][1000 genomes]
rs8028169	0.92[AFR][1000 genomes]
rs8033167	0.92[AFR][1000 genomes]
rs8192354	0.92[AFR][1000 genomes]
rs8192359	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8192360	0.92[AFR][1000 genomes]
rs8192365	0.92[AFR][1000 genomes]
rs8192367	0.88[AFR][1000 genomes]
rs8192379	0.92[AFR][1000 genomes]
rs8192387	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8192393	0.92[AFR][1000 genomes]
rs8192397	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8192400	0.84[EUR][1000 genomes]
rs8192408	0.90[AFR][1000 genomes]
rs8192412	0.92[AFR][1000 genomes]
rs8192413	0.92[AFR][1000 genomes]
rs8192418	0.90[AFR][1000 genomes]
rs890312	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9806184	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9806204	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431395	chr15:72266174-72701777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv530817	chr15:72350885-72773374	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
3	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
4	nsv1601	chr15:72549885-72585176	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72530400-72563400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:72530800-72561200	Strong transcription	Adipose Nuclei	Adipose
3	chr15:72531000-72562400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
4	chr15:72531000-72563000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr15:72531000-72563000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr15:72531000-72563400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr15:72531200-72562800	Strong transcription	Fetal Muscle Leg	muscle
8	chr15:72531800-72561400	Strong transcription	Stomach Smooth Muscle	stomach
9	chr15:72532000-72562600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr15:72532200-72561000	Strong transcription	Liver	Liver
11	chr15:72532200-72561000	Strong transcription	Fetal Intestine Large	intestine
12	chr15:72532200-72561600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr15:72532200-72562200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr15:72532200-72563000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr15:72532400-72562600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr15:72532600-72562200	Strong transcription	Brain Anterior Caudate	brain
17	chr15:72532600-72562800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr15:72532800-72563000	Strong transcription	HSMM	muscle
19	chr15:72533000-72562000	Strong transcription	Rectal Mucosa Donor 29	rectum
20	chr15:72533200-72562400	Strong transcription	Hela-S3	cervix
21	chr15:72533200-72562600	Strong transcription	Primary T cells fromperipheralblood	blood
22	chr15:72536600-72564000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr15:72537200-72564200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr15:72537600-72563400	Strong transcription	HUES6 Cell Line	embryonic stem cell
25	chr15:72538600-72561200	Strong transcription	HUES48 Cell Line	embryonic stem cell
26	chr15:72538800-72562000	Strong transcription	Skeletal Muscle Female	skeletal muscle
27	chr15:72539000-72562200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr15:72539200-72562200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr15:72539400-72561200	Strong transcription	Left Ventricle	heart
30	chr15:72539400-72561600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr15:72539400-72562600	Strong transcription	Osteobl	bone
32	chr15:72539600-72561200	Strong transcription	Brain Germinal Matrix	brain
33	chr15:72539600-72562800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr15:72539800-72562800	Strong transcription	Primary T helper cells fromperipheralblood	blood
35	chr15:72540200-72560000	Strong transcription	Rectal Mucosa Donor 31	rectum
36	chr15:72540200-72561400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
37	chr15:72540200-72561600	Strong transcription	Duodenum Smooth Muscle	Duodenum
38	chr15:72540200-72561600	Strong transcription	HSMMtube	muscle
39	chr15:72540200-72562800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr15:72540200-72563200	Strong transcription	HUES64 Cell Line	embryonic stem cell
41	chr15:72540400-72560600	Strong transcription	Ovary	ovary
42	chr15:72540400-72561000	Strong transcription	Fetal Lung	lung
43	chr15:72540400-72561600	Strong transcription	Placenta Amnion	Placenta Amnion
44	chr15:72540400-72562800	Strong transcription	A549	lung
45	chr15:72540400-72563400	Strong transcription	Fetal Muscle Trunk	muscle
46	chr15:72540600-72560000	Strong transcription	Primary neutrophils fromperipheralblood	blood
47	chr15:72540600-72560800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr15:72540600-72561000	Strong transcription	Lung	lung
49	chr15:72540600-72561400	Strong transcription	Placenta	Placenta
50	chr15:72540600-72561400	Strong transcription	Skeletal Muscle Male	skeletal muscle

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