Variant report

Variant	rs34294127
Chromosome Location	chr15:72425283-72425284
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 125 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:117)

rs_ID	r²[population]
rs10518987	0.94[ASN][1000 genomes]
rs11632505	0.88[ASN][1000 genomes]
rs12324744	0.94[ASN][1000 genomes]
rs12902160	0.87[ASN][1000 genomes]
rs12905794	0.87[ASN][1000 genomes]
rs12905947	0.87[ASN][1000 genomes]
rs12906356	0.94[ASN][1000 genomes]
rs12906612	0.94[ASN][1000 genomes]
rs12907087	0.94[ASN][1000 genomes]
rs12907377	0.94[ASN][1000 genomes]
rs12907707	0.88[ASN][1000 genomes]
rs12908241	1.00[ASN][1000 genomes]
rs12908863	1.00[ASN][1000 genomes]
rs12909590	0.94[ASN][1000 genomes]
rs12910475	1.00[ASN][1000 genomes]
rs12910620	0.87[ASN][1000 genomes]
rs12911278	0.87[ASN][1000 genomes]
rs12911285	0.94[ASN][1000 genomes]
rs12914208	0.87[ASN][1000 genomes]
rs12914269	0.94[ASN][1000 genomes]
rs12914312	1.00[ASN][1000 genomes]
rs12915008	0.87[ASN][1000 genomes]
rs12916039	1.00[ASN][1000 genomes]
rs12916226	0.94[ASN][1000 genomes]
rs12916298	1.00[ASN][1000 genomes]
rs12916789	0.87[ASN][1000 genomes]
rs12917442	0.87[ASN][1000 genomes]
rs1426169	0.94[ASN][1000 genomes]
rs2277543	0.87[ASN][1000 genomes]
rs2288257	0.94[ASN][1000 genomes]
rs2912203	0.88[ASN][1000 genomes]
rs2912204	0.88[ASN][1000 genomes]
rs2912215	0.88[ASN][1000 genomes]
rs2912222	0.88[ASN][1000 genomes]
rs2912224	0.88[ASN][1000 genomes]
rs2912225	0.88[ASN][1000 genomes]
rs2957751	0.94[ASN][1000 genomes]
rs2957752	1.00[ASN][1000 genomes]
rs2959916	0.88[ASN][1000 genomes]
rs2959917	0.88[ASN][1000 genomes]
rs2959918	0.88[ASN][1000 genomes]
rs2959919	0.88[ASN][1000 genomes]
rs2959923	0.88[ASN][1000 genomes]
rs2959924	0.88[ASN][1000 genomes]
rs2959927	0.88[ASN][1000 genomes]
rs2959929	0.88[ASN][1000 genomes]
rs2959931	0.88[ASN][1000 genomes]
rs2959933	0.88[ASN][1000 genomes]
rs2959935	0.88[ASN][1000 genomes]
rs34023258	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34115124	0.88[ASN][1000 genomes]
rs34211376	0.88[ASN][1000 genomes]
rs34346715	0.94[ASN][1000 genomes]
rs34362323	1.00[ASN][1000 genomes]
rs34382909	0.94[ASN][1000 genomes]
rs34481625	1.00[ASN][1000 genomes]
rs34505994	1.00[ASN][1000 genomes]
rs34511502	0.88[ASN][1000 genomes]
rs34538801	0.88[ASN][1000 genomes]
rs34658339	0.94[ASN][1000 genomes]
rs34677662	0.88[ASN][1000 genomes]
rs34694253	1.00[ASN][1000 genomes]
rs34705283	1.00[ASN][1000 genomes]
rs34789424	0.88[ASN][1000 genomes]
rs34815962	0.94[ASN][1000 genomes]
rs35061524	0.87[ASN][1000 genomes]
rs35071085	1.00[ASN][1000 genomes]
rs35104697	0.94[ASN][1000 genomes]
rs35144689	1.00[ASN][1000 genomes]
rs35202897	0.88[ASN][1000 genomes]
rs35259670	1.00[ASN][1000 genomes]
rs35285520	0.94[ASN][1000 genomes]
rs35288005	0.87[ASN][1000 genomes]
rs35362359	1.00[ASN][1000 genomes]
rs35378070	0.94[ASN][1000 genomes]
rs35408293	0.87[ASN][1000 genomes]
rs35457238	0.88[ASN][1000 genomes]
rs35491098	0.87[ASN][1000 genomes]
rs35554838	1.00[ASN][1000 genomes]
rs35694406	0.94[ASN][1000 genomes]
rs36110969	0.94[ASN][1000 genomes]
rs3743227	0.94[ASN][1000 genomes]
rs3743228	0.94[ASN][1000 genomes]
rs3743229	0.94[ASN][1000 genomes]
rs3759817	0.87[ASN][1000 genomes]
rs3759819	0.87[ASN][1000 genomes]
rs3759821	0.87[ASN][1000 genomes]
rs3759901	0.94[ASN][1000 genomes]
rs3825949	0.83[ASN][1000 genomes]
rs55935015	0.87[ASN][1000 genomes]
rs57420281	0.94[ASN][1000 genomes]
rs57692836	0.94[ASN][1000 genomes]
rs58352854	0.94[ASN][1000 genomes]
rs66608810	0.94[ASN][1000 genomes]
rs67195650	0.94[ASN][1000 genomes]
rs71395049	0.87[ASN][1000 genomes]
rs71395050	0.87[ASN][1000 genomes]
rs71395056	1.00[ASN][1000 genomes]
rs71395057	1.00[ASN][1000 genomes]
rs71395058	1.00[ASN][1000 genomes]
rs71395061	1.00[ASN][1000 genomes]
rs71395066	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs71395068	0.94[ASN][1000 genomes]
rs71395070	0.94[ASN][1000 genomes]
rs71395074	0.88[ASN][1000 genomes]
rs71397231	0.88[ASN][1000 genomes]
rs71397232	0.88[ASN][1000 genomes]
rs71397233	0.88[ASN][1000 genomes]
rs71411063	0.88[ASN][1000 genomes]
rs7169150	0.94[ASN][1000 genomes]
rs7174264	0.83[ASN][1000 genomes]
rs73438446	0.94[ASN][1000 genomes]
rs8192359	0.94[ASN][1000 genomes]
rs8192387	0.94[ASN][1000 genomes]
rs8192397	0.94[ASN][1000 genomes]
rs9806184	0.94[ASN][1000 genomes]
rs9806204	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3331306	chr15:72049818-72427559	Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv3433206	chr15:72049838-72427529	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv1042740	chr15:72128799-72482239	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	nsv542426	chr15:72128799-72482239	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
5	nsv431395	chr15:72266174-72701777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
6	nsv833051	chr15:72315471-72508429	Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
7	nsv530817	chr15:72350885-72773374	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
8	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72411400-72432000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr15:72411600-72428000	Weak transcription	Left Ventricle	heart
3	chr15:72411600-72433800	Weak transcription	Fetal Intestine Small	intestine
4	chr15:72412200-72431800	Weak transcription	Psoas Muscle	Psoas
5	chr15:72421000-72431400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr15:72421200-72427800	Weak transcription	Fetal Kidney	kidney
7	chr15:72421800-72433000	Weak transcription	Stomach Smooth Muscle	stomach
8	chr15:72422800-72427000	Weak transcription	HepG2	liver
9	chr15:72423600-72428200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr15:72423800-72432000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr15:72424800-72432000	Weak transcription	GM12878-XiMat	blood

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