Variant report

Variant	rs35554838
Chromosome Location	chr15:72351044-72351045
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 133 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:125)

rs_ID	r²[population]
rs10518987	0.94[ASN][1000 genomes]
rs10732234	1.00[AMR][1000 genomes]
rs12324744	1.00[GIH][hapmap];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12902160	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12902421	1.00[AMR][1000 genomes]
rs12905794	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12905947	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12906244	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12906356	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12906612	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12907087	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12907359	1.00[AMR][1000 genomes]
rs12907377	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12908241	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12908863	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12909590	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12910475	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12910620	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12910700	1.00[AMR][1000 genomes]
rs12911278	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12911285	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12914208	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12914269	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12914312	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12914936	1.00[AMR][1000 genomes]
rs12915008	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12916039	1.00[ASW][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[MKK][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12916226	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12916298	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12916789	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12917442	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1426169	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2277543	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2288257	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2291276	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes]
rs2291277	1.00[ASW][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap]
rs2306577	1.00[AMR][1000 genomes]
rs2306578	1.00[AMR][1000 genomes]
rs2957751	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2957752	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2959923	0.88[ASN][1000 genomes]
rs2959924	0.88[ASN][1000 genomes]
rs2959927	0.88[ASN][1000 genomes]
rs2959929	0.88[ASN][1000 genomes]
rs2959931	0.88[ASN][1000 genomes]
rs2959933	0.88[ASN][1000 genomes]
rs2959935	0.88[ASN][1000 genomes]
rs34023258	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34115124	0.88[ASN][1000 genomes]
rs34211376	0.88[ASN][1000 genomes]
rs34294127	1.00[ASN][1000 genomes]
rs34343226	1.00[AMR][1000 genomes]
rs34346715	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs34362323	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34382909	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs34454276	1.00[AMR][1000 genomes]
rs34481625	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34505994	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34538801	0.88[ASN][1000 genomes]
rs34638996	1.00[AMR][1000 genomes]
rs34658339	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs34677662	0.88[ASN][1000 genomes]
rs34694253	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34705283	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34789424	0.88[ASN][1000 genomes]
rs34815962	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs34846563	1.00[AMR][1000 genomes]
rs35061524	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35071085	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35104697	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs35135570	1.00[AMR][1000 genomes]
rs35136885	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35144689	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35145719	1.00[AMR][1000 genomes]
rs35200902	1.00[AMR][1000 genomes]
rs35202897	0.88[ASN][1000 genomes]
rs35259670	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35285520	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs35288005	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35362359	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35378070	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs35408293	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35491098	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35694406	0.94[ASN][1000 genomes]
rs35836103	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36032558	1.00[AMR][1000 genomes]
rs36110969	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3743227	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3743228	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3743229	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3759815	1.00[AMR][1000 genomes]
rs3759817	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3759819	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3759821	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3759901	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3825949	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs55935015	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57420281	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs57692836	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs58352854	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs66608810	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs67195650	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs71395046	1.00[AMR][1000 genomes]
rs71395049	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs71395050	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs71395056	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71395057	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71395058	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71395061	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71395066	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs71395068	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs71395070	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs71395074	0.88[ASN][1000 genomes]
rs71397231	0.88[ASN][1000 genomes]
rs71397232	0.88[ASN][1000 genomes]
rs71397233	0.88[ASN][1000 genomes]
rs7169150	0.94[ASN][1000 genomes]
rs7174264	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs73438446	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs8192359	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs8192387	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs8192397	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs890312	1.00[AMR][1000 genomes]
rs9806184	1.00[GIH][hapmap];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9806204	1.00[GIH][hapmap];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3331306	chr15:72049818-72427559	Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv3433206	chr15:72049838-72427529	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv1042740	chr15:72128799-72482239	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	nsv542426	chr15:72128799-72482239	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
5	nsv431395	chr15:72266174-72701777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
6	nsv833051	chr15:72315471-72508429	Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
7	nsv984089	chr15:72350806-72352174	Weak transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
8	nsv530817	chr15:72350885-72773374	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72301000-72361200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr15:72333200-72353800	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr15:72334000-72355000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr15:72338800-72352800	Weak transcription	Left Ventricle	heart
5	chr15:72338800-72353000	Weak transcription	Placenta	Placenta
6	chr15:72339000-72352800	Weak transcription	Ovary	ovary
7	chr15:72339000-72353000	Weak transcription	Stomach Smooth Muscle	stomach
8	chr15:72339000-72353600	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr15:72339000-72363400	Weak transcription	Primary B cells from cord blood	blood
10	chr15:72342000-72352800	Weak transcription	Right Atrium	heart
11	chr15:72342800-72352800	Weak transcription	Thymus	Thymus
12	chr15:72343800-72353200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr15:72344000-72355200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr15:72344400-72353000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr15:72344400-72353600	Weak transcription	Fetal Muscle Trunk	muscle
16	chr15:72344800-72353200	Weak transcription	Lung	lung
17	chr15:72345000-72352800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr15:72345200-72352800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr15:72345200-72352800	Weak transcription	Fetal Muscle Leg	muscle
20	chr15:72345200-72353000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr15:72345200-72353000	Weak transcription	Esophagus	oesophagus
22	chr15:72345200-72353000	Weak transcription	Fetal Stomach	stomach
23	chr15:72345400-72353200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr15:72349400-72351800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr15:72349600-72351400	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr15:72349600-72351400	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chr15:72349600-72356400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr15:72349800-72351600	Enhancers	Fetal Intestine Small	intestine
29	chr15:72350200-72351600	Enhancers	iPS-20b Cell Line	embryonic stem cell
30	chr15:72350200-72351600	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr15:72350200-72352800	Weak transcription	HSMMtube	muscle
32	chr15:72350200-72353000	Weak transcription	Right Ventricle	heart
33	chr15:72350200-72353200	Weak transcription	Stomach Mucosa	stomach
34	chr15:72350200-72355400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr15:72350400-72351200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr15:72350400-72351200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr15:72350400-72351400	Enhancers	ES-I3 Cell Line	embryonic stem cell
38	chr15:72350400-72351400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr15:72350400-72351400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr15:72350400-72351400	Weak transcription	Brain Cingulate Gyrus	brain
41	chr15:72350400-72351400	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr15:72350400-72352800	Weak transcription	Liver	Liver
43	chr15:72350400-72352800	Weak transcription	Psoas Muscle	Psoas
44	chr15:72350400-72352800	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr15:72350400-72353000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr15:72350400-72353000	Weak transcription	Colon Smooth Muscle	Colon
47	chr15:72350400-72353000	Weak transcription	Fetal Heart	heart
48	chr15:72350400-72353000	Weak transcription	HSMM	muscle
49	chr15:72350400-72353200	Weak transcription	Adipose Nuclei	Adipose
50	chr15:72350400-72353200	Weak transcription	Fetal Kidney	kidney

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links