Variant report

Variant	rs34343226
Chromosome Location	chr15:72114532-72114533
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:72114514..72117570-chr15:72121768..72126233,5	K562	blood:
2	chr15:72100596..72102959-chr15:72114173..72115754,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-THSD4-4	chr15:72114376-72114540	ENSG00000260037.1
2	lnc-THSD4-4	chr15:72114376-72114796	ENSG00000260037.1

Variant related genes	Relation type
ENSG00000031544	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs12902160	1.00[AMR][1000 genomes]
rs12902421	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12905794	1.00[AMR][1000 genomes]
rs12905947	1.00[AMR][1000 genomes]
rs12906244	1.00[AMR][1000 genomes]
rs12907359	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12910475	1.00[AMR][1000 genomes]
rs12910620	1.00[AMR][1000 genomes]
rs12910700	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12911278	1.00[AMR][1000 genomes]
rs12914208	1.00[AMR][1000 genomes]
rs12914936	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12915008	1.00[AMR][1000 genomes]
rs12916789	1.00[AMR][1000 genomes]
rs12917442	1.00[AMR][1000 genomes]
rs2277543	1.00[AMR][1000 genomes]
rs2291276	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2291277	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs2306577	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2306578	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28602607	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34454276	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34481625	1.00[AMR][1000 genomes]
rs34638996	1.00[AMR][1000 genomes]
rs34846563	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35061524	1.00[AMR][1000 genomes]
rs35135570	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35136885	1.00[AMR][1000 genomes]
rs35144689	1.00[AMR][1000 genomes]
rs35145719	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs35200902	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35259670	1.00[AMR][1000 genomes]
rs35288005	1.00[AMR][1000 genomes]
rs35408293	1.00[AMR][1000 genomes]
rs35554838	1.00[AMR][1000 genomes]
rs35836103	1.00[AMR][1000 genomes]
rs36032558	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3759815	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3759817	1.00[AMR][1000 genomes]
rs55935015	1.00[AMR][1000 genomes]
rs6494968	1.00[GIH][hapmap]
rs71395046	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs71395049	1.00[AMR][1000 genomes]
rs71395050	1.00[AMR][1000 genomes]
rs71395056	1.00[AMR][1000 genomes]
rs71395057	1.00[AMR][1000 genomes]
rs71395058	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904334	chr15:71737376-72177659	Strong transcription Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1036938	chr15:71948106-72272855	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	esv3331306	chr15:72049818-72427559	Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	esv3433206	chr15:72049838-72427529	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72107200-72115200	Weak transcription	Fetal Stomach	stomach
2	chr15:72107800-72115600	Weak transcription	Fetal Heart	heart
3	chr15:72108000-72118600	Weak transcription	Fetal Brain Female	brain
4	chr15:72108600-72120600	Weak transcription	Fetal Brain Male	brain
5	chr15:72110600-72118200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr15:72110800-72116400	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr15:72110800-72122800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr15:72111600-72116600	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
9	chr15:72111800-72116400	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr15:72112000-72115800	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr15:72112000-72116200	Strong transcription	Fetal Muscle Trunk	muscle
12	chr15:72112200-72119200	ZNF genes & repeats	A549	lung
13	chr15:72112400-72114600	ZNF genes & repeats	HSMMtube	muscle
14	chr15:72112600-72114800	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr15:72112800-72118000	ZNF genes & repeats	Liver	Liver
16	chr15:72113000-72115400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr15:72113000-72116000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr15:72113000-72118600	Weak transcription	Colon Smooth Muscle	Colon
19	chr15:72113000-72118800	Weak transcription	Dnd41	blood
20	chr15:72113600-72117000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr15:72113800-72114800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
22	chr15:72113800-72114800	ZNF genes & repeats	NHDF-Ad	bronchial
23	chr15:72113800-72115400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
24	chr15:72113800-72115400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
25	chr15:72113800-72115400	ZNF genes & repeats	Fetal Lung	lung
26	chr15:72113800-72115600	Strong transcription	Placenta Amnion	Placenta Amnion
27	chr15:72113800-72115800	ZNF genes & repeats	Stomach Smooth Muscle	stomach
28	chr15:72113800-72116400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
29	chr15:72113800-72116400	ZNF genes & repeats	Left Ventricle	heart
30	chr15:72113800-72116400	ZNF genes & repeats	NH-A	brain
31	chr15:72113800-72116400	ZNF genes & repeats	NHEK	skin
32	chr15:72113800-72116600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr15:72113800-72116800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr15:72114000-72114600	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
35	chr15:72114000-72114800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
36	chr15:72114000-72114800	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
37	chr15:72114000-72115000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr15:72114000-72115200	Weak transcription	Small Intestine	intestine
39	chr15:72114000-72115400	ZNF genes & repeats	HSMM	muscle
40	chr15:72114000-72115600	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
41	chr15:72114000-72115600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
42	chr15:72114000-72115600	ZNF genes & repeats	Osteobl	bone
43	chr15:72114000-72115800	Strong transcription	Fetal Intestine Large	intestine
44	chr15:72114000-72116200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr15:72114000-72116200	ZNF genes & repeats	Adipose Nuclei	Adipose
46	chr15:72114000-72116400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
47	chr15:72114000-72116400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr15:72114000-72116400	Strong transcription	Rectal Smooth Muscle	rectum
49	chr15:72114000-72116800	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr15:72114000-72117000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland

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