Variant report

Variant	rs12914208
Chromosome Location	chr15:72313442-72313443
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 120 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:106)

rs_ID	r²[population]
rs10732234	1.00[AMR][1000 genomes]
rs12324744	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12902160	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12902421	1.00[AMR][1000 genomes]
rs12905794	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12905947	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12906244	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12906356	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12906612	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12907087	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12907359	1.00[AMR][1000 genomes]
rs12907377	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12908241	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12908863	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12910475	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12910620	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12910700	1.00[AMR][1000 genomes]
rs12911278	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12911285	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12914269	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12914312	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12914936	1.00[AMR][1000 genomes]
rs12915008	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12916039	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12916226	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12916298	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12916789	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12917442	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1426169	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2277543	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2288257	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2291276	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2291277	0.87[ASN][1000 genomes]
rs2306577	1.00[AMR][1000 genomes]
rs2306578	1.00[AMR][1000 genomes]
rs2957751	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2957752	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34023258	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs34294127	0.87[ASN][1000 genomes]
rs34343226	1.00[AMR][1000 genomes]
rs34346715	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs34362323	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34382909	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs34454276	1.00[AMR][1000 genomes]
rs34481625	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34505994	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs34638996	1.00[AMR][1000 genomes]
rs34658339	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs34694253	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs34705283	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34815962	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs34846563	1.00[AMR][1000 genomes]
rs35061524	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35071085	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs35104697	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs35135570	1.00[AMR][1000 genomes]
rs35136885	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35144689	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35145719	1.00[AMR][1000 genomes]
rs35200902	1.00[AMR][1000 genomes]
rs35259670	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35285520	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs35288005	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35362359	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs35378070	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs35408293	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35491098	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35554838	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35694406	0.81[ASN][1000 genomes]
rs35836103	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36032558	1.00[AMR][1000 genomes]
rs36110969	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs3743227	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs3743228	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs3743229	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs3759815	1.00[AMR][1000 genomes]
rs3759817	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3759819	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3759821	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3759901	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs3825949	1.00[AMR][1000 genomes]
rs55935015	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57420281	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs57692836	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs58352854	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs66608810	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs67195650	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs71395046	1.00[AMR][1000 genomes]
rs71395049	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71395050	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71395056	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs71395057	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs71395058	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs71395061	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs71395066	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs71395068	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs71395070	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7169150	0.81[ASN][1000 genomes]
rs7174264	1.00[AMR][1000 genomes]
rs73438446	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs8192359	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs8192387	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs8192397	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs890312	1.00[AMR][1000 genomes]
rs9806184	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9806204	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3331306	chr15:72049818-72427559	Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv3433206	chr15:72049838-72427529	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv516871	chr15:72126034-72325595	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv1042740	chr15:72128799-72482239	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
5	nsv542426	chr15:72128799-72482239	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
6	nsv904336	chr15:72145937-72329906	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
7	nsv457198	chr15:72203517-72325595	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv569912	chr15:72203517-72325595	Strong transcription Genic enhancers Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv457200	chr15:72261385-72325595	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv569914	chr15:72261385-72325595	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv431395	chr15:72266174-72701777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
12	nsv569916	chr15:72268986-72325595	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv457201	chr15:72284647-72329906	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv569917	chr15:72284647-72329906	ZNF genes & repeats Enhancers Weak transcription Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72226800-72343600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr15:72227800-72326200	Weak transcription	Fetal Brain Male	brain
3	chr15:72261000-72326200	Weak transcription	NH-A	brain
4	chr15:72266400-72323000	Weak transcription	Lung	lung
5	chr15:72266600-72315000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr15:72272000-72323200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr15:72277200-72325800	Weak transcription	Fetal Heart	heart
8	chr15:72280200-72338800	Weak transcription	Hela-S3	cervix
9	chr15:72280800-72318200	Weak transcription	Pancreas	Pancrea
10	chr15:72282000-72341800	Weak transcription	Brain Angular Gyrus	brain
11	chr15:72282200-72314200	Weak transcription	NHEK	skin
12	chr15:72282200-72337800	Weak transcription	Esophagus	oesophagus
13	chr15:72282200-72338800	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr15:72282400-72325800	Weak transcription	Rectal Smooth Muscle	rectum
15	chr15:72282400-72326200	Weak transcription	Fetal Brain Female	brain
16	chr15:72282400-72329000	Weak transcription	Brain Germinal Matrix	brain
17	chr15:72282600-72315800	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr15:72282600-72332000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr15:72282800-72323000	Weak transcription	Thymus	Thymus
20	chr15:72282800-72325800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr15:72282800-72347000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr15:72282800-72349800	Weak transcription	Brain Hippocampus Middle	brain
23	chr15:72283600-72329600	Weak transcription	Duodenum Mucosa	Duodenum
24	chr15:72284200-72326400	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr15:72288400-72314800	Strong transcription	Placenta	Placenta
26	chr15:72289200-72337800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr15:72290000-72316600	Weak transcription	Fetal Stomach	stomach
28	chr15:72291000-72325800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr15:72291800-72323200	Weak transcription	Colon Smooth Muscle	Colon
30	chr15:72292200-72338200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr15:72292400-72326000	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr15:72295400-72337800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr15:72297600-72314000	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr15:72298400-72344000	Weak transcription	Spleen	Spleen
35	chr15:72298600-72315000	Weak transcription	Fetal Intestine Small	intestine
36	chr15:72298800-72325400	Weak transcription	Left Ventricle	heart
37	chr15:72299400-72315600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr15:72299400-72325600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr15:72299400-72326000	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr15:72299400-72329000	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr15:72299600-72329600	Weak transcription	Primary B cells from cord blood	blood
42	chr15:72299800-72313600	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr15:72299800-72321600	Weak transcription	Primary hematopoietic stem cells	blood
44	chr15:72300000-72326000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr15:72300000-72326400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr15:72300000-72329200	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr15:72300000-72338000	Weak transcription	Stomach Smooth Muscle	stomach
48	chr15:72300000-72351000	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr15:72300200-72319800	Weak transcription	HSMMtube	muscle
50	chr15:72300200-72341800	Weak transcription	Brain Substantia Nigra	brain

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