Variant report

Variant	rs7174264
Chromosome Location	chr15:72537560-72537561
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:72537383..72539855-chr15:72564362..72566037,2	MCF-7	breast:
2	chr15:72498523..72500643-chr15:72535160..72537562,2	K562	blood:

Variant related genes	Relation type
ENSG00000137817	Chromatin interaction
ENSG00000067225	Chromatin interaction

Extended variants
information (count: 145 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:142)

rs_ID	r²[population]
rs10518987	0.86[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs10732234	1.00[AMR][1000 genomes]
rs11632505	0.83[ASN][1000 genomes]
rs12324744	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12902160	1.00[AMR][1000 genomes]
rs12905794	1.00[AMR][1000 genomes]
rs12906356	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12906612	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12907087	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12907377	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12907707	0.83[ASN][1000 genomes]
rs12908241	0.83[ASN][1000 genomes]
rs12908863	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12909590	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12910475	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12910620	1.00[AMR][1000 genomes]
rs12911278	1.00[AMR][1000 genomes]
rs12911285	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12914208	1.00[AMR][1000 genomes]
rs12914269	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12914312	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12916039	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12916226	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12916298	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12917442	1.00[AMR][1000 genomes]
rs1426169	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2288257	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2415133	0.81[AFR][1000 genomes]
rs28414926	0.83[AFR][1000 genomes]
rs2912203	0.83[ASN][1000 genomes]
rs2912204	0.83[ASN][1000 genomes]
rs2912215	0.83[ASN][1000 genomes]
rs2912222	0.83[ASN][1000 genomes]
rs2912224	0.83[ASN][1000 genomes]
rs2912225	0.83[ASN][1000 genomes]
rs2957752	0.83[ASN][1000 genomes]
rs2959916	0.83[ASN][1000 genomes]
rs2959917	0.83[ASN][1000 genomes]
rs2959918	0.83[ASN][1000 genomes]
rs2959919	0.83[ASN][1000 genomes]
rs2959923	0.83[ASN][1000 genomes]
rs2959924	0.83[ASN][1000 genomes]
rs2959927	0.83[ASN][1000 genomes]
rs2959929	0.83[ASN][1000 genomes]
rs2959931	0.83[ASN][1000 genomes]
rs2959933	0.83[ASN][1000 genomes]
rs2959935	0.83[ASN][1000 genomes]
rs34023258	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs34115124	0.83[ASN][1000 genomes]
rs34211376	0.83[ASN][1000 genomes]
rs34294127	0.83[ASN][1000 genomes]
rs34346715	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34362323	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs34382909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34481625	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs34505994	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs34511502	0.83[ASN][1000 genomes]
rs34538801	0.83[ASN][1000 genomes]
rs34638996	1.00[AMR][1000 genomes]
rs34658339	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34677662	0.83[ASN][1000 genomes]
rs34694253	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs34705283	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs34789424	0.83[ASN][1000 genomes]
rs34815962	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs35061524	1.00[AMR][1000 genomes]
rs35071085	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs35104697	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35136885	1.00[AMR][1000 genomes]
rs35144689	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs35202897	0.83[ASN][1000 genomes]
rs35259670	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs35285520	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35288005	1.00[AMR][1000 genomes]
rs35362359	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs35378070	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35408293	1.00[AMR][1000 genomes]
rs35457238	0.83[ASN][1000 genomes]
rs35554838	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs35694406	0.94[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs35836103	1.00[AMR][1000 genomes]
rs36110969	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3743227	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3743228	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3743229	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3759817	1.00[AMR][1000 genomes]
rs3759901	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3825949	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55935015	1.00[AMR][1000 genomes]
rs57420281	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57595193	0.90[AFR][1000 genomes]
rs57692836	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58352854	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60350471	0.96[AFR][1000 genomes]
rs60600349	0.94[AFR][1000 genomes]
rs61109283	0.81[AFR][1000 genomes]
rs6494994	0.96[AFR][1000 genomes]
rs66608810	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67195650	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs71395056	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs71395057	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs71395058	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs71395061	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs71395066	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs71395068	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs71395070	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs71395074	0.83[ASN][1000 genomes]
rs71397231	0.83[ASN][1000 genomes]
rs71397232	0.83[ASN][1000 genomes]
rs71397233	0.83[ASN][1000 genomes]
rs71411063	0.83[ASN][1000 genomes]
rs7169150	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73436365	0.85[AFR][1000 genomes]
rs73436366	0.85[AFR][1000 genomes]
rs73436377	0.85[AFR][1000 genomes]
rs73436397	0.96[AFR][1000 genomes]
rs73436400	0.96[AFR][1000 genomes]
rs73438403	0.94[AFR][1000 genomes]
rs73438405	0.96[AFR][1000 genomes]
rs73438414	0.96[AFR][1000 genomes]
rs73438446	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73438458	0.92[AFR][1000 genomes]
rs73438466	0.82[AFR][1000 genomes]
rs8028169	0.96[AFR][1000 genomes]
rs8033167	0.96[AFR][1000 genomes]
rs8192354	0.96[AFR][1000 genomes]
rs8192359	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8192360	0.96[AFR][1000 genomes]
rs8192365	0.96[AFR][1000 genomes]
rs8192367	0.92[AFR][1000 genomes]
rs8192379	0.96[AFR][1000 genomes]
rs8192387	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8192393	0.96[AFR][1000 genomes]
rs8192397	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8192400	1.00[EUR][1000 genomes]
rs8192408	0.94[AFR][1000 genomes]
rs8192412	0.96[AFR][1000 genomes]
rs8192413	0.96[AFR][1000 genomes]
rs8192418	0.90[AFR][1000 genomes]
rs890312	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9806184	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9806204	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431395	chr15:72266174-72701777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv530817	chr15:72350885-72773374	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
3	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72524800-72551400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:72525400-72548600	Weak transcription	Fetal Heart	heart
3	chr15:72530400-72542200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr15:72530400-72563400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:72530600-72542000	Weak transcription	Stomach Mucosa	stomach
6	chr15:72530600-72545600	Weak transcription	Small Intestine	intestine
7	chr15:72530800-72561200	Strong transcription	Adipose Nuclei	Adipose
8	chr15:72531000-72539000	Strong transcription	Placenta	Placenta
9	chr15:72531000-72562400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
10	chr15:72531000-72563000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr15:72531000-72563000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr15:72531000-72563400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr15:72531200-72539000	Strong transcription	Primary T helper cells PMA-I stimulated	--
14	chr15:72531200-72562800	Strong transcription	Fetal Muscle Leg	muscle
15	chr15:72531400-72538600	Strong transcription	Duodenum Smooth Muscle	Duodenum
16	chr15:72531400-72538800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr15:72531400-72542000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
18	chr15:72531600-72539800	Strong transcription	Fetal Brain Female	brain
19	chr15:72531800-72561400	Strong transcription	Stomach Smooth Muscle	stomach
20	chr15:72532000-72539800	Strong transcription	Primary T cells from cord blood	blood
21	chr15:72532000-72543200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr15:72532000-72562600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr15:72532200-72538000	Strong transcription	Primary B cells from cord blood	blood
24	chr15:72532200-72538200	Strong transcription	Muscle Satellite Cultured Cells	--
25	chr15:72532200-72538200	Strong transcription	Skeletal Muscle Male	skeletal muscle
26	chr15:72532200-72538400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr15:72532200-72538400	Strong transcription	Primary monocytes fromperipheralblood	blood
28	chr15:72532200-72538400	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr15:72532200-72538800	Strong transcription	Fetal Muscle Trunk	muscle
30	chr15:72532200-72561000	Strong transcription	Liver	Liver
31	chr15:72532200-72561000	Strong transcription	Fetal Intestine Large	intestine
32	chr15:72532200-72561600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr15:72532200-72562200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr15:72532200-72563000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr15:72532400-72538400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr15:72532400-72538400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr15:72532400-72539000	Strong transcription	A549	lung
38	chr15:72532400-72540400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr15:72532400-72562600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr15:72532600-72538000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr15:72532600-72538200	Strong transcription	K562	blood
42	chr15:72532600-72538400	Strong transcription	Primary T helper cells fromperipheralblood	blood
43	chr15:72532600-72562200	Strong transcription	Brain Anterior Caudate	brain
44	chr15:72532600-72562800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr15:72532800-72538200	Strong transcription	Brain Germinal Matrix	brain
46	chr15:72532800-72563000	Strong transcription	HSMM	muscle
47	chr15:72533000-72562000	Strong transcription	Rectal Mucosa Donor 29	rectum
48	chr15:72533200-72538400	Strong transcription	Brain Inferior Temporal Lobe	brain
49	chr15:72533200-72538400	Strong transcription	Monocytes-CD14+_RO01746	blood
50	chr15:72533200-72562400	Strong transcription	Hela-S3	cervix

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