Variant report

Variant	rs60350471
Chromosome Location	chr15:72529745-72529746
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:72526714..72532102-chr15:72561781..72566953,8	K562	blood:
2	chr14:75745312..75745859-chr15:72529308..72529952,2	Hela-S3	cervix:
3	chr15:72528324..72530609-chr15:72547356..72549474,2	MCF-7	breast:
4	chr15:72527394..72534715-chr15:72562814..72566489,12	MCF-7	breast:
5	chr15:72518424..72531344-chr15:72562525..72571046,23	K562	blood:
6	chr15:71405378..71408247-chr15:72528741..72531638,2	MCF-7	breast:
7	chr15:72529452..72530374-chr19:30432563..30433473,2	Hela-S3	cervix:
8	chr15:72529508..72531983-chr15:72540363..72542642,2	MCF-7	breast:
9	chr15:72529245..72529942-chr17:79828281..79829235,2	Hela-S3	cervix:
10	chr15:72527933..72532527-chr15:72562459..72567122,12	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000225362	Chromatin interaction
ENSG00000170345	Chromatin interaction
ENSG00000137817	Chromatin interaction
ENSG00000141522	Chromatin interaction
ENSG00000105176	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10083583	0.81[AFR][1000 genomes]
rs10518987	0.81[AFR][1000 genomes]
rs12324744	0.96[AFR][1000 genomes]
rs12907087	0.92[AFR][1000 genomes]
rs12907377	0.92[AFR][1000 genomes]
rs12909590	0.82[AFR][1000 genomes]
rs12911285	0.92[AFR][1000 genomes]
rs12914269	0.92[AFR][1000 genomes]
rs1426169	0.92[AFR][1000 genomes]
rs2415133	0.85[AFR][1000 genomes]
rs28414926	0.87[AFR][1000 genomes]
rs34346715	0.92[AFR][1000 genomes]
rs34382909	0.96[AFR][1000 genomes]
rs35104697	0.92[AFR][1000 genomes]
rs35694406	0.90[AFR][1000 genomes]
rs36110969	0.92[AFR][1000 genomes]
rs3743227	0.96[AFR][1000 genomes]
rs3743228	0.96[AFR][1000 genomes]
rs3743229	0.96[AFR][1000 genomes]
rs57420281	0.96[AFR][1000 genomes]
rs57595193	0.89[AFR][1000 genomes]
rs57692836	0.96[AFR][1000 genomes]
rs58352854	0.96[AFR][1000 genomes]
rs60600349	0.98[AFR][1000 genomes]
rs61109283	0.85[AFR][1000 genomes]
rs6494994	1.00[AFR][1000 genomes]
rs67195650	0.96[AFR][1000 genomes]
rs7174264	0.96[AFR][1000 genomes]
rs73436365	0.89[AFR][1000 genomes]
rs73436366	0.89[AFR][1000 genomes]
rs73436377	0.89[AFR][1000 genomes]
rs73436397	1.00[AFR][1000 genomes]
rs73436400	1.00[AFR][1000 genomes]
rs73438403	0.98[AFR][1000 genomes]
rs73438405	1.00[AFR][1000 genomes]
rs73438414	1.00[AFR][1000 genomes]
rs73438446	0.89[AFR][1000 genomes]
rs73438458	0.91[AFR][1000 genomes]
rs73438466	0.81[AFR][1000 genomes]
rs8028169	1.00[AFR][1000 genomes]
rs8033167	1.00[AFR][1000 genomes]
rs8192354	1.00[AFR][1000 genomes]
rs8192360	1.00[AFR][1000 genomes]
rs8192365	1.00[AFR][1000 genomes]
rs8192367	0.96[AFR][1000 genomes]
rs8192379	1.00[AFR][1000 genomes]
rs8192393	1.00[AFR][1000 genomes]
rs8192408	0.98[AFR][1000 genomes]
rs8192412	1.00[AFR][1000 genomes]
rs8192413	1.00[AFR][1000 genomes]
rs8192418	0.93[AFR][1000 genomes]
rs890312	0.92[AFR][1000 genomes]
rs9806184	0.96[AFR][1000 genomes]
rs9806204	0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431395	chr15:72266174-72701777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv530817	chr15:72350885-72773374	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
3	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72524400-72529800	Weak transcription	Lung	lung
2	chr15:72524400-72532000	Weak transcription	Brain Angular Gyrus	brain
3	chr15:72524400-72533000	Weak transcription	Gastric	stomach
4	chr15:72524400-72533200	Weak transcription	Ovary	ovary
5	chr15:72524400-72533400	Weak transcription	Pancreas	Pancrea
6	chr15:72524600-72532200	Weak transcription	Liver	Liver
7	chr15:72524600-72532600	Weak transcription	Right Ventricle	heart
8	chr15:72524600-72533000	Weak transcription	Aorta	Aorta
9	chr15:72524800-72533000	Weak transcription	Thymus	Thymus
10	chr15:72524800-72533400	Weak transcription	Brain Cingulate Gyrus	brain
11	chr15:72524800-72533400	Weak transcription	Brain Substantia Nigra	brain
12	chr15:72524800-72533600	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr15:72524800-72551400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr15:72525000-72531000	Weak transcription	Brain Anterior Caudate	brain
15	chr15:72525000-72532800	Weak transcription	Brain Germinal Matrix	brain
16	chr15:72525000-72533000	Weak transcription	Primary B cells from peripheral blood	blood
17	chr15:72525000-72533400	Weak transcription	Colon Smooth Muscle	Colon
18	chr15:72525000-72533400	Weak transcription	Fetal Kidney	kidney
19	chr15:72525000-72533400	Weak transcription	Rectal Smooth Muscle	rectum
20	chr15:72525200-72532000	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr15:72525200-72532200	Weak transcription	Fetal Intestine Large	intestine
22	chr15:72525200-72533000	Weak transcription	Fetal Brain Male	brain
23	chr15:72525200-72533000	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr15:72525200-72533200	Weak transcription	Fetal Intestine Small	intestine
25	chr15:72525400-72529800	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr15:72525400-72530400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr15:72525400-72548600	Weak transcription	Fetal Heart	heart
28	chr15:72525600-72531000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr15:72525600-72531200	Weak transcription	Fetal Muscle Leg	muscle
30	chr15:72525600-72532200	Weak transcription	Fetal Lung	lung
31	chr15:72525600-72532200	Weak transcription	Fetal Muscle Trunk	muscle
32	chr15:72525600-72532400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr15:72527800-72530600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr15:72528600-72530400	Flanking Active TSS	K562	blood
35	chr15:72528600-72530600	Enhancers	Placenta Amnion	Placenta Amnion
36	chr15:72528600-72530600	Flanking Active TSS	A549	lung
37	chr15:72528600-72530600	Flanking Active TSS	Hela-S3	cervix
38	chr15:72528600-72530800	Enhancers	Primary monocytes fromperipheralblood	blood
39	chr15:72528800-72529800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr15:72528800-72529800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr15:72528800-72529800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr15:72528800-72530000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr15:72528800-72530000	Enhancers	Stomach Mucosa	stomach
44	chr15:72528800-72530000	Flanking Active TSS	Dnd41	blood
45	chr15:72528800-72530000	Flanking Active TSS	HMEC	breast
46	chr15:72528800-72530000	Flanking Active TSS	NHDF-Ad	bronchial
47	chr15:72528800-72530200	Enhancers	Primary T cells fromperipheralblood	blood
48	chr15:72528800-72530200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
49	chr15:72528800-72530400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
50	chr15:72528800-72530400	Flanking Active TSS	NHEK	skin

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