Variant report

Variant	rs61109283
Chromosome Location	chr15:72414849-72414850
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:72409555..72412428-chr15:72413056..72416140,3	K562	blood:
2	chr15:72409555..72412428-chr15:72412821..72416140,4	K562	blood:
3	chr15:72412621..72414863-chr15:72421242..72424090,2	K562	blood:

Variant related genes	Relation type
ENSG00000166192	Chromatin interaction
ENSG00000066933	Chromatin interaction

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10048041	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10083583	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10518975	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12324744	0.81[AFR][1000 genomes]
rs12907087	0.81[AFR][1000 genomes]
rs12907377	0.81[AFR][1000 genomes]
rs12911285	0.81[AFR][1000 genomes]
rs12914269	0.81[AFR][1000 genomes]
rs13379635	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1426169	0.81[AFR][1000 genomes]
rs16956355	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2415133	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28414926	0.93[AFR][1000 genomes]
rs28478122	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34346715	0.81[AFR][1000 genomes]
rs34382909	0.81[AFR][1000 genomes]
rs35104697	0.81[AFR][1000 genomes]
rs36110969	0.81[AFR][1000 genomes]
rs3743227	0.81[AFR][1000 genomes]
rs3743228	0.81[AFR][1000 genomes]
rs3743229	0.81[AFR][1000 genomes]
rs56820256	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57420281	0.81[AFR][1000 genomes]
rs57595193	0.87[AFR][1000 genomes]
rs57692836	0.81[AFR][1000 genomes]
rs58352854	0.81[AFR][1000 genomes]
rs59572935	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60350471	0.85[AFR][1000 genomes]
rs60543967	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60600349	0.83[AFR][1000 genomes]
rs6494994	0.85[AFR][1000 genomes]
rs67195650	0.81[AFR][1000 genomes]
rs7174264	0.81[AFR][1000 genomes]
rs7176558	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73434307	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73434311	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73434331	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73434332	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73434358	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73434377	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73434390	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73434401	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73436314	1.00[AMR][1000 genomes]
rs73436315	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73436318	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73436326	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73436327	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73436331	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73436332	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73436365	0.95[AFR][1000 genomes]
rs73436366	0.95[AFR][1000 genomes]
rs73436377	0.95[AFR][1000 genomes]
rs73436397	0.85[AFR][1000 genomes]
rs73436400	0.85[AFR][1000 genomes]
rs73438403	0.87[AFR][1000 genomes]
rs73438405	0.85[AFR][1000 genomes]
rs73438414	0.85[AFR][1000 genomes]
rs73438446	0.83[AFR][1000 genomes]
rs73438458	0.85[AFR][1000 genomes]
rs748471	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs748473	1.00[AMR][1000 genomes]
rs8028169	0.85[AFR][1000 genomes]
rs8033167	0.85[AFR][1000 genomes]
rs8192354	0.85[AFR][1000 genomes]
rs8192360	0.85[AFR][1000 genomes]
rs8192365	0.85[AFR][1000 genomes]
rs8192367	0.81[AFR][1000 genomes]
rs8192379	0.85[AFR][1000 genomes]
rs8192393	0.85[AFR][1000 genomes]
rs8192408	0.83[AFR][1000 genomes]
rs8192412	0.85[AFR][1000 genomes]
rs8192413	0.85[AFR][1000 genomes]
rs8192418	0.91[AFR][1000 genomes]
rs9806184	0.81[AFR][1000 genomes]
rs9806204	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3331306	chr15:72049818-72427559	Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv3433206	chr15:72049838-72427529	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv1042740	chr15:72128799-72482239	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	nsv542426	chr15:72128799-72482239	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
5	nsv431395	chr15:72266174-72701777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
6	nsv833051	chr15:72315471-72508429	Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
7	nsv530817	chr15:72350885-72773374	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
8	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72411400-72432000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr15:72411600-72415000	Weak transcription	Right Ventricle	heart
3	chr15:72411600-72428000	Weak transcription	Left Ventricle	heart
4	chr15:72411600-72433800	Weak transcription	Fetal Intestine Small	intestine
5	chr15:72411800-72416600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr15:72411800-72421000	Weak transcription	Fetal Kidney	kidney
7	chr15:72412200-72431800	Weak transcription	Psoas Muscle	Psoas

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