Variant report

Variant	rs73436314
Chromosome Location	chr15:72328967-72328968
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:72328208..72329058-chr5:83308083..83308842,2	MCF-7	breast:
2	chr15:72324783..72327632-chr15:72328181..72330697,2	MCF-7	breast:
3	chr15:72322441..72324750-chr15:72328303..72329981,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SENP8-1	chr15:72328856-72329030	ENSG00000261632.1

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10048041	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10083583	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10518975	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13379549	1.00[AMR][1000 genomes]
rs13379635	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16956213	1.00[AMR][1000 genomes]
rs16956251	1.00[AMR][1000 genomes]
rs16956307	1.00[AMR][1000 genomes]
rs16956355	1.00[AMR][1000 genomes]
rs2415133	1.00[AMR][1000 genomes]
rs28478122	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28542248	1.00[AMR][1000 genomes]
rs56820256	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59572935	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60543967	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61026619	1.00[AMR][1000 genomes]
rs61109283	1.00[AMR][1000 genomes]
rs7176558	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73432496	1.00[AMR][1000 genomes]
rs73432498	1.00[AMR][1000 genomes]
rs73434307	1.00[AMR][1000 genomes]
rs73434311	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73434331	1.00[AMR][1000 genomes]
rs73434332	1.00[AMR][1000 genomes]
rs73434358	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73434377	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73434390	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73434401	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73436315	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73436318	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73436326	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73436327	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73436331	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73436332	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs748471	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs748473	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3331306	chr15:72049818-72427559	Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv3433206	chr15:72049838-72427529	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv1042740	chr15:72128799-72482239	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	nsv542426	chr15:72128799-72482239	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
5	nsv904336	chr15:72145937-72329906	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv431395	chr15:72266174-72701777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
7	nsv457201	chr15:72284647-72329906	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv569917	chr15:72284647-72329906	ZNF genes & repeats Enhancers Weak transcription Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv833051	chr15:72315471-72508429	Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72226800-72343600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr15:72280200-72338800	Weak transcription	Hela-S3	cervix
3	chr15:72282000-72341800	Weak transcription	Brain Angular Gyrus	brain
4	chr15:72282200-72337800	Weak transcription	Esophagus	oesophagus
5	chr15:72282200-72338800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr15:72282400-72329000	Weak transcription	Brain Germinal Matrix	brain
7	chr15:72282600-72332000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr15:72282800-72347000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr15:72282800-72349800	Weak transcription	Brain Hippocampus Middle	brain
10	chr15:72283600-72329600	Weak transcription	Duodenum Mucosa	Duodenum
11	chr15:72289200-72337800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr15:72292200-72338200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr15:72295400-72337800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr15:72298400-72344000	Weak transcription	Spleen	Spleen
15	chr15:72299400-72329000	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr15:72299600-72329600	Weak transcription	Primary B cells from cord blood	blood
17	chr15:72300000-72329200	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr15:72300000-72338000	Weak transcription	Stomach Smooth Muscle	stomach
19	chr15:72300000-72351000	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr15:72300200-72341800	Weak transcription	Brain Substantia Nigra	brain
21	chr15:72300400-72338200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr15:72300600-72338000	Weak transcription	Liver	Liver
23	chr15:72301000-72332200	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr15:72301000-72341800	Weak transcription	Brain Anterior Caudate	brain
25	chr15:72301000-72361200	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr15:72301800-72329000	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr15:72302000-72329600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr15:72302000-72329600	Weak transcription	Primary B cells from peripheral blood	blood
29	chr15:72302200-72349400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr15:72302800-72337800	Weak transcription	HSMM	muscle
31	chr15:72308000-72329400	Weak transcription	GM12878-XiMat	blood
32	chr15:72308000-72335200	Weak transcription	Aorta	Aorta
33	chr15:72308400-72332400	Weak transcription	Ovary	ovary
34	chr15:72311600-72341800	Weak transcription	Fetal Kidney	kidney
35	chr15:72313400-72337800	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr15:72314000-72338000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr15:72314000-72338200	Weak transcription	Adipose Nuclei	Adipose
38	chr15:72314200-72332400	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr15:72315600-72329400	Weak transcription	A549	lung
40	chr15:72315800-72329400	Weak transcription	Placenta	Placenta
41	chr15:72315800-72331000	Weak transcription	Fetal Lung	lung
42	chr15:72315800-72338200	Weak transcription	Small Intestine	intestine
43	chr15:72316400-72337800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr15:72317000-72329000	Weak transcription	Fetal Intestine Small	intestine
45	chr15:72322400-72329000	Weak transcription	Primary hematopoietic stem cells	blood
46	chr15:72323400-72332600	Weak transcription	Primary T cells from cord blood	blood
47	chr15:72323600-72338000	Weak transcription	Thymus	Thymus
48	chr15:72323800-72329000	Weak transcription	Lung	lung
49	chr15:72323800-72329200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr15:72323800-72329200	Weak transcription	Primary T cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links