Variant report

Variant	rs73436331
Chromosome Location	chr15:72366767-72366768
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10048041	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10083583	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10518975	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13379635	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16956251	1.00[AMR][1000 genomes]
rs16956307	1.00[AMR][1000 genomes]
rs16956355	1.00[AMR][1000 genomes]
rs2415133	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28478122	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56820256	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59572935	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60543967	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61109283	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7176558	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73432496	1.00[AMR][1000 genomes]
rs73432498	1.00[AMR][1000 genomes]
rs73434307	1.00[AMR][1000 genomes]
rs73434311	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73434331	1.00[AMR][1000 genomes]
rs73434332	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73434358	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73434377	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73434390	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73434401	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73436314	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73436315	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73436318	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73436326	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73436327	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73436332	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs748471	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs748473	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3331306	chr15:72049818-72427559	Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv3433206	chr15:72049838-72427529	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv1042740	chr15:72128799-72482239	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	nsv542426	chr15:72128799-72482239	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
5	nsv431395	chr15:72266174-72701777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
6	nsv833051	chr15:72315471-72508429	Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
7	nsv530817	chr15:72350885-72773374	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
8	esv11550	chr15:72353301-72395288	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv904337	chr15:72361942-72390515	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72351200-72395800	Weak transcription	Rectal Smooth Muscle	rectum
2	chr15:72353600-72379600	Weak transcription	Primary T cells from cord blood	blood
3	chr15:72354000-72366800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr15:72354000-72378400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr15:72354400-72374800	Weak transcription	Psoas Muscle	Psoas
6	chr15:72355800-72376200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr15:72356400-72370200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr15:72361600-72370800	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr15:72361600-72377400	Weak transcription	Fetal Intestine Small	intestine
10	chr15:72361600-72390600	Weak transcription	Aorta	Aorta
11	chr15:72361600-72391400	Weak transcription	Ovary	ovary
12	chr15:72363600-72366800	Weak transcription	A549	lung
13	chr15:72363600-72370200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr15:72363800-72366800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr15:72366400-72367000	Enhancers	Fetal Kidney	kidney
16	chr15:72366600-72367000	Enhancers	Colon Smooth Muscle	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links