Variant report

Variant	rs73436326
Chromosome Location	chr15:72353815-72353816
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10048041	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10083583	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10518975	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13379635	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16956251	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16956307	1.00[AMR][1000 genomes]
rs16956355	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2415133	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28414926	0.84[AFR][1000 genomes]
rs28478122	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56820256	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59572935	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60543967	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61109283	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7176558	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73432496	1.00[AMR][1000 genomes]
rs73432498	1.00[AMR][1000 genomes]
rs73434307	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73434311	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73434331	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73434332	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73434358	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73434377	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73434390	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73434401	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73436314	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73436315	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73436318	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73436327	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73436331	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73436332	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73436365	0.87[AFR][1000 genomes]
rs73436366	0.87[AFR][1000 genomes]
rs73436377	0.87[AFR][1000 genomes]
rs748471	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs748473	1.00[AMR][1000 genomes]
rs8192418	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3331306	chr15:72049818-72427559	Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv3433206	chr15:72049838-72427529	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv1042740	chr15:72128799-72482239	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	nsv542426	chr15:72128799-72482239	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
5	nsv431395	chr15:72266174-72701777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
6	nsv833051	chr15:72315471-72508429	Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
7	nsv530817	chr15:72350885-72773374	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
8	esv11550	chr15:72353301-72395288	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72301000-72361200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr15:72334000-72355000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr15:72339000-72363400	Weak transcription	Primary B cells from cord blood	blood
4	chr15:72344000-72355200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr15:72349600-72356400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr15:72350200-72355400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr15:72350400-72354000	Weak transcription	Hela-S3	cervix
8	chr15:72350400-72354800	Weak transcription	Brain Anterior Caudate	brain
9	chr15:72350400-72355600	Weak transcription	HMEC	breast
10	chr15:72350600-72354200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr15:72350600-72354600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr15:72350800-72360000	Weak transcription	A549	lung
13	chr15:72351200-72354800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr15:72351200-72355400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr15:72351200-72361000	Weak transcription	Fetal Intestine Large	intestine
16	chr15:72351200-72363400	Weak transcription	NHDF-Ad	bronchial
17	chr15:72351200-72395800	Weak transcription	Rectal Smooth Muscle	rectum
18	chr15:72351600-72355200	Weak transcription	Osteobl	bone
19	chr15:72352400-72355400	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr15:72352800-72354000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr15:72352800-72354000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr15:72352800-72354000	Enhancers	Right Atrium	heart
23	chr15:72352800-72354200	Enhancers	Left Ventricle	heart
24	chr15:72352800-72354200	Enhancers	HSMMtube	muscle
25	chr15:72352800-72354400	Enhancers	Ovary	ovary
26	chr15:72353000-72354000	Enhancers	Fetal Heart	heart
27	chr15:72353000-72354000	Enhancers	Placenta	Placenta
28	chr15:72353000-72354000	Enhancers	Stomach Smooth Muscle	stomach
29	chr15:72353000-72354200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
30	chr15:72353000-72354200	Strong transcription	Fetal Stomach	stomach
31	chr15:72353000-72354400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr15:72353000-72354600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr15:72353200-72354000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr15:72353200-72354400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr15:72353200-72354400	Enhancers	Gastric	stomach
36	chr15:72353200-72354400	Enhancers	Lung	lung
37	chr15:72353200-72361200	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr15:72353400-72354200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr15:72353400-72354200	Weak transcription	Fetal Intestine Small	intestine
40	chr15:72353400-72354200	Genic enhancers	Thymus	Thymus
41	chr15:72353600-72354000	Enhancers	Breast Myoepithelial Primary Cells	Breast
42	chr15:72353600-72354000	Enhancers	Fetal Muscle Leg	muscle
43	chr15:72353600-72354200	Genic enhancers	Fetal Muscle Trunk	muscle
44	chr15:72353600-72379600	Weak transcription	Primary T cells from cord blood	blood
45	chr15:72353800-72354200	Enhancers	Primary T cells fromperipheralblood	blood
46	chr15:72353800-72354200	Weak transcription	Psoas Muscle	Psoas
47	chr15:72353800-72366400	Weak transcription	Fetal Kidney	kidney

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