Variant report

Variant	rs73436366
Chromosome Location	chr15:72440375-72440376
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10083583	0.91[AFR][1000 genomes]
rs10518975	0.82[AFR][1000 genomes]
rs12324744	0.85[AFR][1000 genomes]
rs12907087	0.85[AFR][1000 genomes]
rs12907377	0.85[AFR][1000 genomes]
rs12911285	0.85[AFR][1000 genomes]
rs12914269	0.85[AFR][1000 genomes]
rs13379635	0.82[AFR][1000 genomes]
rs1426169	0.85[AFR][1000 genomes]
rs2415133	0.95[AFR][1000 genomes]
rs28414926	0.98[AFR][1000 genomes]
rs28478122	0.82[AFR][1000 genomes]
rs34346715	0.85[AFR][1000 genomes]
rs34382909	0.85[AFR][1000 genomes]
rs35104697	0.85[AFR][1000 genomes]
rs35694406	0.84[AFR][1000 genomes]
rs36110969	0.85[AFR][1000 genomes]
rs3743227	0.85[AFR][1000 genomes]
rs3743228	0.85[AFR][1000 genomes]
rs3743229	0.85[AFR][1000 genomes]
rs56820256	0.82[AFR][1000 genomes]
rs57420281	0.85[AFR][1000 genomes]
rs57595193	0.91[AFR][1000 genomes]
rs57692836	0.85[AFR][1000 genomes]
rs58352854	0.85[AFR][1000 genomes]
rs59572935	0.82[AFR][1000 genomes]
rs60350471	0.89[AFR][1000 genomes]
rs60543967	0.87[AFR][1000 genomes]
rs60600349	0.87[AFR][1000 genomes]
rs61109283	0.95[AFR][1000 genomes]
rs6494994	0.89[AFR][1000 genomes]
rs67195650	0.85[AFR][1000 genomes]
rs7174264	0.85[AFR][1000 genomes]
rs73434331	0.83[AFR][1000 genomes]
rs73434332	0.87[AFR][1000 genomes]
rs73434377	0.82[AFR][1000 genomes]
rs73436318	0.82[AFR][1000 genomes]
rs73436326	0.87[AFR][1000 genomes]
rs73436327	0.84[AFR][1000 genomes]
rs73436332	0.84[AFR][1000 genomes]
rs73436365	1.00[AFR][1000 genomes]
rs73436377	1.00[AFR][1000 genomes]
rs73436397	0.89[AFR][1000 genomes]
rs73436400	0.89[AFR][1000 genomes]
rs73438403	0.87[AFR][1000 genomes]
rs73438405	0.89[AFR][1000 genomes]
rs73438414	0.89[AFR][1000 genomes]
rs73438446	0.87[AFR][1000 genomes]
rs73438458	0.89[AFR][1000 genomes]
rs73438466	0.83[AFR][1000 genomes]
rs8028169	0.89[AFR][1000 genomes]
rs8033167	0.89[AFR][1000 genomes]
rs8192354	0.89[AFR][1000 genomes]
rs8192360	0.89[AFR][1000 genomes]
rs8192365	0.89[AFR][1000 genomes]
rs8192367	0.85[AFR][1000 genomes]
rs8192379	0.89[AFR][1000 genomes]
rs8192393	0.89[AFR][1000 genomes]
rs8192408	0.87[AFR][1000 genomes]
rs8192412	0.89[AFR][1000 genomes]
rs8192413	0.89[AFR][1000 genomes]
rs8192418	0.95[AFR][1000 genomes]
rs890312	0.82[AFR][1000 genomes]
rs9806184	0.85[AFR][1000 genomes]
rs9806204	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042740	chr15:72128799-72482239	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv542426	chr15:72128799-72482239	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv431395	chr15:72266174-72701777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
4	nsv833051	chr15:72315471-72508429	Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv530817	chr15:72350885-72773374	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
6	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72428400-72440400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:72428400-72447400	Weak transcription	Pancreas	Pancrea
3	chr15:72429800-72445800	Weak transcription	Fetal Brain Female	brain
4	chr15:72430000-72447200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr15:72430600-72447400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr15:72431400-72447600	Weak transcription	Spleen	Spleen
7	chr15:72432600-72445600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr15:72434400-72447400	Weak transcription	HSMM	muscle
9	chr15:72438800-72440400	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr15:72439400-72445200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr15:72440000-72445800	Weak transcription	Brain Anterior Caudate	brain
12	chr15:72440200-72441400	Weak transcription	Fetal Kidney	kidney
13	chr15:72440200-72447400	Weak transcription	Brain Angular Gyrus	brain
14	chr15:72440200-72447600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links