Variant report

Variant	rs8028169
Chromosome Location	chr15:72508549-72508550
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:72505538..72509992-chr15:72512503..72516214,6	K562	blood:
2	chr15:72500487..72503084-chr15:72507972..72509575,2	K562	blood:

Variant related genes	Relation type
ENSG00000067225	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10083583	0.81[AFR][1000 genomes]
rs10518987	0.81[AFR][1000 genomes]
rs12324744	0.96[AFR][1000 genomes]
rs12907087	0.92[AFR][1000 genomes]
rs12907377	0.92[AFR][1000 genomes]
rs12909590	0.82[AFR][1000 genomes]
rs12911285	0.92[AFR][1000 genomes]
rs12914269	0.92[AFR][1000 genomes]
rs1426169	0.92[AFR][1000 genomes]
rs2415133	0.85[AFR][1000 genomes]
rs28414926	0.87[AFR][1000 genomes]
rs34346715	0.92[AFR][1000 genomes]
rs34382909	0.96[AFR][1000 genomes]
rs35104697	0.92[AFR][1000 genomes]
rs35694406	0.90[AFR][1000 genomes]
rs36110969	0.92[AFR][1000 genomes]
rs3743227	0.96[AFR][1000 genomes]
rs3743228	0.96[AFR][1000 genomes]
rs3743229	0.96[AFR][1000 genomes]
rs57420281	0.96[AFR][1000 genomes]
rs57595193	0.89[AFR][1000 genomes]
rs57692836	0.96[AFR][1000 genomes]
rs58352854	0.96[AFR][1000 genomes]
rs60350471	1.00[AFR][1000 genomes]
rs60600349	0.98[AFR][1000 genomes]
rs61109283	0.85[AFR][1000 genomes]
rs6494994	1.00[AFR][1000 genomes]
rs67195650	0.96[AFR][1000 genomes]
rs7174264	0.96[AFR][1000 genomes]
rs73436365	0.89[AFR][1000 genomes]
rs73436366	0.89[AFR][1000 genomes]
rs73436377	0.89[AFR][1000 genomes]
rs73436397	1.00[AFR][1000 genomes]
rs73436400	1.00[AFR][1000 genomes]
rs73438403	0.98[AFR][1000 genomes]
rs73438405	1.00[AFR][1000 genomes]
rs73438414	1.00[AFR][1000 genomes]
rs73438446	0.89[AFR][1000 genomes]
rs73438458	0.91[AFR][1000 genomes]
rs73438466	0.81[AFR][1000 genomes]
rs8033167	1.00[AFR][1000 genomes]
rs8192354	1.00[AFR][1000 genomes]
rs8192360	1.00[AFR][1000 genomes]
rs8192365	1.00[AFR][1000 genomes]
rs8192367	0.96[AFR][1000 genomes]
rs8192379	1.00[AFR][1000 genomes]
rs8192393	1.00[AFR][1000 genomes]
rs8192408	0.98[AFR][1000 genomes]
rs8192412	1.00[AFR][1000 genomes]
rs8192413	1.00[AFR][1000 genomes]
rs8192418	0.93[AFR][1000 genomes]
rs890312	0.92[AFR][1000 genomes]
rs9806184	0.96[AFR][1000 genomes]
rs9806204	0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431395	chr15:72266174-72701777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv530817	chr15:72350885-72773374	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
3	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72490400-72512000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
2	chr15:72490600-72512000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr15:72490600-72513000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr15:72490600-72513200	Strong transcription	Primary B cells from peripheral blood	blood
5	chr15:72490600-72513600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr15:72490600-72513800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr15:72490600-72515600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:72490600-72518000	Strong transcription	Dnd41	blood
9	chr15:72490800-72511800	Strong transcription	Primary neutrophils fromperipheralblood	blood
10	chr15:72490800-72511800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr15:72490800-72511800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr15:72490800-72512200	Strong transcription	Primary T helper cells fromperipheralblood	blood
13	chr15:72490800-72513000	Strong transcription	HUES64 Cell Line	embryonic stem cell
14	chr15:72490800-72513000	Strong transcription	Sigmoid Colon	Sigmoid Colon
15	chr15:72490800-72514200	Strong transcription	Primary T cells from cord blood	blood
16	chr15:72490800-72514400	Strong transcription	HUES6 Cell Line	embryonic stem cell
17	chr15:72490800-72518400	Strong transcription	HUES48 Cell Line	embryonic stem cell
18	chr15:72491000-72511600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr15:72491000-72512200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr15:72491000-72512200	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr15:72491000-72512600	Strong transcription	Primary hematopoietic stem cells	blood
22	chr15:72491000-72512600	Strong transcription	Rectal Mucosa Donor 29	rectum
23	chr15:72491000-72513000	Strong transcription	H9 Cell Line	embryonic stem cell
24	chr15:72491000-72513400	Strong transcription	Fetal Lung	lung
25	chr15:72491000-72513600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
26	chr15:72491000-72513600	Strong transcription	Placenta Amnion	Placenta Amnion
27	chr15:72491000-72513800	Strong transcription	H1 Cell Line	embryonic stem cell
28	chr15:72491000-72513800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr15:72491000-72514600	Strong transcription	K562	blood
30	chr15:72491200-72512000	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr15:72491200-72512000	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr15:72491200-72512800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
33	chr15:72491200-72513000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr15:72491400-72511600	Strong transcription	Ovary	ovary
35	chr15:72491400-72512400	Strong transcription	Primary monocytes fromperipheralblood	blood
36	chr15:72491600-72511200	Strong transcription	GM12878-XiMat	blood
37	chr15:72491600-72511800	Strong transcription	Primary T cells fromperipheralblood	blood
38	chr15:72491600-72513600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr15:72491800-72511600	Strong transcription	Primary T helper naive cells from peripheral blood	blood
40	chr15:72491800-72513200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr15:72492200-72514000	Strong transcription	Placenta	Placenta
42	chr15:72492200-72514200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr15:72492400-72511800	Strong transcription	ES-I3 Cell Line	embryonic stem cell
44	chr15:72492400-72513800	Strong transcription	Rectal Mucosa Donor 31	rectum
45	chr15:72494000-72511400	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr15:72494200-72511800	Strong transcription	Adipose Nuclei	Adipose
47	chr15:72494400-72513400	Strong transcription	Thymus	Thymus
48	chr15:72496000-72513800	Strong transcription	Fetal Thymus	thymus
49	chr15:72496200-72511200	Strong transcription	Fetal Muscle Trunk	muscle
50	chr15:72496600-72511600	Strong transcription	Brain Germinal Matrix	brain

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