Variant report

Variant	rs3743228
Chromosome Location	chr15:72524370-72524371
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SP1	chr15:72522559-72524970	HCT-116	colon:	n/a	chr15:72523809-72523818 chr15:72523984-72523996 chr15:72523631-72523645 chr15:72523630-72523642 chr15:72523630-72523641 chr15:72523593-72523602 chr15:72523631-72523640 chr15:72523630-72523642 chr15:72523592-72523602 chr15:72523632-72523641 chr15:72523631-72523641 chr15:72523984-72523996 chr15:72523631-72523641 chr15:72523808-72523820 chr15:72523985-72523994 chr15:72523592-72523606 chr15:72523591-72523602 chr15:72523808-72523820 chr15:72522580-72522594 chr15:72523592-72523601 chr15:72523779-72523800 chr15:72523591-72523603 chr15:72523171-72523185 chr15:72523810-72523819 chr15:72523591-72523603 chr15:72523631-72523640
2	MAZ	chr15:72520233-72524949	IMR90	lung:	n/a	chr15:72523592-72523602 chr15:72521428-72521441 chr15:72521429-72521440 chr15:72521431-72521440 chr15:72521430-72521439 chr15:72521988-72521998 chr15:72522194-72522204 chr15:72520676-72520687 chr15:72521425-72521444 chr15:72521429-72521439 chr15:72521429-72521440
3	RELA	chr15:72522442-72524465	GM12892	blood:	n/a	n/a
4	POLR2A	chr15:72522254-72524830	MCF10A-Er-Src	breast:	n/a	n/a
5	MAX	chr15:72522341-72524956	A549	lung:	n/a	chr15:72523592-72523602
6	TFAP2C	chr15:72523082-72524782	Hela-S3	cervix:	n/a	n/a
7	POLR2A	chr15:72522234-72525097	Hela-S3	cervix:	n/a	n/a
8	ELK4	chr15:72523335-72524417	Hela-S3	cervix:	n/a	n/a
9	HA-E2F1	chr15:72522308-72524734	MCF-7	breast:	n/a	chr15:72523212-72523224 chr15:72523682-72523692 chr15:72523216-72523223 chr15:72523810-72523819 chr15:72523679-72523689 chr15:72523216-72523223 chr15:72523632-72523641 chr15:72523082-72523091 chr15:72523216-72523223
10	RFX5	chr15:72524153-72524652	H1-hESC	embryonic stem cell:	n/a	chr15:72524495-72524503
11	ZNF143	chr15:72524209-72524886	K562	blood:	n/a	n/a
12	PBX3	chr15:72522452-72524879	A549	lung:	n/a	n/a
13	MAFK	chr15:72522773-72524947	Hela-S3	cervix:	n/a	chr15:72524389-72524400 chr15:72524390-72524401 chr15:72524390-72524401 chr15:72524381-72524398 chr15:72524388-72524402 chr15:72524385-72524400 chr15:72524389-72524400
14	MAX	chr15:72522218-72524881	MCF-7	breast:	n/a	chr15:72523592-72523602
15	TCF12	chr15:72522303-72524604	MCF-7	breast:	n/a	chr15:72523922-72523932 chr15:72523169-72523179
16	MAFK	chr15:72524255-72524543	HepG2	liver:	n/a	chr15:72524389-72524400 chr15:72524390-72524401 chr15:72524390-72524401 chr15:72524381-72524398 chr15:72524388-72524402 chr15:72524385-72524400 chr15:72524389-72524400
17	NFYA	chr15:72523343-72524596	Hela-S3	cervix:	n/a	n/a
18	HEY1	chr15:72522159-72524829	HepG2	liver:	n/a	chr15:72523677-72523692 chr15:72523679-72523694 chr15:72522587-72522602 chr15:72522429-72522444 chr15:72522405-72522420 chr15:72523840-72523855 chr15:72522571-72522586
19	ZBTB7A	chr15:72523361-72524408	ECC-1	luminal epithelium:	n/a	n/a
20	CCNT2	chr15:72521891-72524989	K562	blood:	n/a	chr15:72523207-72523216 chr15:72523632-72523641 chr15:72522183-72522192
21	ZKSCAN1	chr15:72522771-72524770	Hela-S3	cervix:	n/a	chr15:72523552-72523565
22	ATF3	chr15:72522908-72524371	A549	lung:	n/a	chr15:72523632-72523641 chr15:72523810-72523819
23	BCLAF1	chr15:72520084-72524529	GM12878	blood:	n/a	chr15:72522589-72522602 chr15:72523584-72523593 chr15:72523587-72523596 chr15:72523680-72523693 chr15:72523789-72523802 chr15:72523682-72523691 chr15:72523677-72523690 chr15:72523679-72523688 chr15:72523585-72523598 chr15:72523647-72523660 chr15:72523681-72523694 chr15:72522432-72522445 chr15:72523685-72523694 chr15:72523678-72523691
24	MTA3	chr15:72520093-72524888	GM12878	blood:	n/a	n/a
25	POLR2A	chr15:72522313-72524383	HepG2	liver:	n/a	n/a
26	RELA	chr15:72523281-72524536	GM10847	blood:	n/a	n/a
27	WRNIP1	chr15:72522810-72524375	GM12878	blood:	n/a	n/a
28	MAFF	chr15:72524243-72524871	K562	blood:	n/a	chr15:72524384-72524402
29	MXI1	chr15:72520376-72524809	GM12878	blood:	n/a	chr15:72521431-72521440 chr15:72521429-72521438
30	TAF1	chr15:72522359-72524431	SK-N-SH	brain:	n/a	n/a
31	TCF12	chr15:72522170-72524881	ECC-1	luminal epithelium:	n/a	chr15:72523922-72523932 chr15:72523169-72523179
32	GATA3	chr15:72522217-72525139	A549	lung:	n/a	chr15:72524693-72524710
33	PML	chr15:72522653-72524419	MCF-7	breast:	n/a	chr15:72523132-72523140
34	POLR2A	chr15:72520240-72524727	GM18505	blood:	n/a	n/a
35	POLR2A	chr15:72520542-72525140	HUVEC	blood vessel:	n/a	n/a
36	POLR2A	chr15:72520068-72525092	U87	brain:	n/a	n/a
37	RELA	chr15:72522436-72524716	GM15510	blood:	n/a	n/a
38	MXI1	chr15:72520100-72525104	IMR90	lung:	n/a	chr15:72521431-72521440 chr15:72521429-72521438
39	POLR2A	chr15:72517612-72524924	GM12892	blood:	n/a	n/a
40	TAF1	chr15:72522661-72524586	ECC-1	luminal epithelium:	n/a	n/a
41	TAL1	chr15:72524148-72524981	K562	blood:	n/a	chr15:72524521-72524532
42	MYC	chr15:72523292-72524783	Hela-S3	cervix:	n/a	chr15:72523592-72523602
43	GABPA	chr15:72522485-72524506	MCF-7	breast:	n/a	chr15:72523632-72523641
44	MYC	chr15:72523408-72524828	MCF10A-Er-Src	breast:	n/a	chr15:72523592-72523602
45	POLR2A	chr15:72517567-72525077	U87	brain:	n/a	n/a
46	STAT3	chr15:72524366-72524810	MCF10A-Er-Src	breast:	n/a	chr15:72524767-72524778 chr15:72524608-72524619
47	E2F6	chr15:72523021-72524395	H1-hESC	embryonic stem cell:	n/a	chr15:72523212-72523224 chr15:72523682-72523692 chr15:72523216-72523223 chr15:72523810-72523819 chr15:72523679-72523689 chr15:72523216-72523223 chr15:72523632-72523641 chr15:72523082-72523091 chr15:72523216-72523223
48	POLR2A	chr15:72520090-72525590	Hela-S3	cervix:	n/a	n/a
49	MAX	chr15:72520235-72525247	A549	lung:	n/a	chr15:72523592-72523602 chr15:72521428-72521441 chr15:72521429-72521440 chr15:72521431-72521440 chr15:72521428-72521438 chr15:72521430-72521439 chr15:72521988-72521998 chr15:72522194-72522204 chr15:72520676-72520687 chr15:72521425-72521444 chr15:72521429-72521439 chr15:72521429-72521440
50	POLR2A	chr15:72520732-72524941	HCT-116	colon:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:72408747..72410825-chr15:72521864..72524427,3	MCF-7	breast:
2	chr15:72494801..72498747-chr15:72521044..72524691,4	K562	blood:
3	chr15:72520927..72524574-chr15:72541674..72546336,5	MCF-7	breast:
4	chr15:72519778..72525226-chr15:72547384..72553620,8	MCF-7	breast:
5	chr15:72524142..72524977-chr8:52811199..52811704,2	Hela-S3	cervix:
6	chr1:229643673..229644605-chr15:72523998..72524686,2	Hela-S3	cervix:
7	chr15:72523860..72524413-chr15:72668313..72668819,2	Hela-S3	cervix:
8	chr15:72521683..72524680-chr15:72976957..72979803,2	K562	blood:
9	chr15:72523266..72524516-chr17:62223169..62223956,3	Hela-S3	cervix:
10	chr15:72521910..72524475-chr15:72556723..72559528,2	MCF-7	breast:
11	chr15:72523731..72525453-chr15:74219224..74220936,2	MCF-7	breast:
12	chr15:72521977..72524663-chr15:72766747..72769820,3	MCF-7	breast:
13	chr14:105219418..105220276-chr15:72523980..72524606,2	Hela-S3	cervix:
14	chr15:72523746..72524626-chr17:48942946..48943899,3	Hela-S3	cervix:
15	chr15:72508936..72512734-chr15:72522012..72524775,3	K562	blood:
16	chr14:64970339..64971228-chr15:72523918..72524433,2	Hela-S3	cervix:
17	chr15:72519310..72525410-chr15:72562881..72568730,22	MCF-7	breast:
18	chr15:72518424..72531344-chr15:72562525..72571046,23	K562	blood:
19	chr15:72523793..72524699-chr2:9770627..9771470,2	Hela-S3	cervix:
20	chr15:72523582..72526035-chr15:72559818..72561426,2	K562	blood:
21	chr14:74551467..74552216-chr15:72523755..72524462,2	Hela-S3	cervix:
22	chr1:78444432..78445064-chr15:72524130..72524851,2	Hela-S3	cervix:
23	chr15:72523282..72524844-chr15:72764635..72767200,2	MCF-7	breast:
24	chr1:76251676..76252625-chr15:72523942..72524487,2	Hela-S3	cervix:
25	chr13:45010518..45011086-chr15:72523669..72524463,2	Hela-S3	cervix:
26	chr15:72521996..72524543-chr15:72977386..72979463,3	MCF-7	breast:
27	chr15:72523802..72524539-chr19:49954586..49955194,2	Hela-S3	cervix:
28	chr15:72524243..72524745-chr20:2450876..2451792,2	Hela-S3	cervix:
29	chr15:72514333..72526693-chr15:72558323..72568559,52	MCF-7	breast:
30	chr15:72520024..72526293-chr15:72562525..72566333,14	K562	blood:
31	chr15:72522084..72524504-chr15:72637723..72639391,2	MCF-7	breast:
32	chr15:72523692..72524414-chr18:3451263..3452137,2	Hela-S3	cervix:
33	chr15:72523201..72524932-chr15:72878327..72881016,2	MCF-7	breast:
34	chr15:72509056..72514932-chr15:72519551..72525663,8	K562	blood:
35	chr1:11967995..11968690-chr15:72523442..72524584,3	Hela-S3	cervix:
36	chr15:72524064..72524717-chr4:111119820..111120443,2	Hela-S3	cervix:
37	chr15:72523714..72524571-chr5:179050555..179051464,2	Hela-S3	cervix:

Variant related genes	Relation type
PKM	TF binding region
ENSG00000089775	Chromatin interaction
ENSG00000137955	Chromatin interaction
ENSG00000141232	Chromatin interaction
ENSG00000066933	Chromatin interaction
ENSG00000126804	Chromatin interaction
ENSG00000162613	Chromatin interaction
ENSG00000223635	Chromatin interaction
ENSG00000199347	Chromatin interaction
ENSG00000261801	Chromatin interaction
ENSG00000168300	Chromatin interaction
ENSG00000170522	Chromatin interaction
ENSG00000166192	Chromatin interaction
ENSG00000175202	Chromatin interaction
ENSG00000169045	Chromatin interaction
ENSG00000125835	Chromatin interaction
ENSG00000261423	Chromatin interaction
ENSG00000260729	Chromatin interaction
ENSG00000213614	Chromatin interaction
ENSG00000184990	Chromatin interaction
ENSG00000102804	Chromatin interaction
ENSG00000166233	Chromatin interaction
ENSG00000177426	Chromatin interaction
ENSG00000162616	Chromatin interaction
ENSG00000137817	Chromatin interaction
ENSG00000207690	Chromatin interaction
ENSG00000140463	Chromatin interaction
ENSG00000067225	Chromatin interaction
ENSG00000260339	Chromatin interaction
ENSG00000134308	Chromatin interaction
ENSG00000266402	Chromatin interaction
ENSG00000199753	Chromatin interaction
ENSG00000069248	Chromatin interaction
ENSG00000205659	Chromatin interaction
ENSG00000104872	Chromatin interaction

Extended variants
information (count: 156 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:153)

rs_ID	r²[population]
rs10518987	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10732234	1.00[AMR][1000 genomes]
rs11632505	0.94[ASN][1000 genomes]
rs12324744	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12899442	0.84[ASN][1000 genomes]
rs12902160	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12904667	0.84[ASN][1000 genomes]
rs12905794	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12906356	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12906612	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12907087	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12907377	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12907707	0.94[ASN][1000 genomes]
rs12908241	0.94[ASN][1000 genomes]
rs12908863	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12909590	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12910475	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12910620	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12911278	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12911285	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12914208	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12914269	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12914312	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12916039	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12916226	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12916298	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12917402	0.84[ASN][1000 genomes]
rs12917442	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1426169	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2288257	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2415133	0.81[AFR][1000 genomes]
rs28414926	0.83[AFR][1000 genomes]
rs2912203	0.94[ASN][1000 genomes]
rs2912204	0.94[ASN][1000 genomes]
rs2912215	0.94[ASN][1000 genomes]
rs2912222	0.94[ASN][1000 genomes]
rs2912224	0.94[ASN][1000 genomes]
rs2912225	0.94[ASN][1000 genomes]
rs2957751	0.88[ASN][1000 genomes]
rs2957752	0.94[ASN][1000 genomes]
rs2959916	0.94[ASN][1000 genomes]
rs2959917	0.94[ASN][1000 genomes]
rs2959918	0.94[ASN][1000 genomes]
rs2959919	0.94[ASN][1000 genomes]
rs2959923	0.94[ASN][1000 genomes]
rs2959924	0.94[ASN][1000 genomes]
rs2959927	0.94[ASN][1000 genomes]
rs2959929	0.94[ASN][1000 genomes]
rs2959931	0.94[ASN][1000 genomes]
rs2959933	0.94[ASN][1000 genomes]
rs2959935	0.94[ASN][1000 genomes]
rs2959940	0.84[ASN][1000 genomes]
rs34023258	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs34115124	0.94[ASN][1000 genomes]
rs34211376	0.94[ASN][1000 genomes]
rs34294127	0.94[ASN][1000 genomes]
rs34346715	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34362323	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs34382909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34481625	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs34505994	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs34511502	0.94[ASN][1000 genomes]
rs34538801	0.94[ASN][1000 genomes]
rs34638996	1.00[AMR][1000 genomes]
rs34658339	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34677662	0.94[ASN][1000 genomes]
rs34694253	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs34705283	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs34789424	0.94[ASN][1000 genomes]
rs34815962	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35061524	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs35071085	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs35104697	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35136885	1.00[AMR][1000 genomes]
rs35144689	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs35202897	0.94[ASN][1000 genomes]
rs35259670	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs35285520	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35288005	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs35362359	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs35378070	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35408293	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs35457238	0.94[ASN][1000 genomes]
rs35491098	0.81[ASN][1000 genomes]
rs35554838	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs35694406	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs35836103	1.00[AMR][1000 genomes]
rs36110969	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3743227	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3743229	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3759817	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs3759819	0.81[ASN][1000 genomes]
rs3759821	0.81[ASN][1000 genomes]
rs3759901	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3825949	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4776592	0.84[ASN][1000 genomes]
rs4776593	0.84[ASN][1000 genomes]
rs4777501	0.84[ASN][1000 genomes]
rs55935015	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs57420281	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57595193	0.90[AFR][1000 genomes]
rs57692836	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58352854	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60350471	0.96[AFR][1000 genomes]
rs60600349	0.94[AFR][1000 genomes]
rs61109283	0.81[AFR][1000 genomes]
rs6494994	0.96[AFR][1000 genomes]
rs66608810	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67195650	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71395056	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs71395057	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs71395058	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs71395061	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs71395066	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs71395068	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71395070	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71395074	0.94[ASN][1000 genomes]
rs71397231	0.94[ASN][1000 genomes]
rs71397232	0.94[ASN][1000 genomes]
rs71397233	0.94[ASN][1000 genomes]
rs71411063	0.94[ASN][1000 genomes]
rs7169150	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7174264	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73436365	0.85[AFR][1000 genomes]
rs73436366	0.85[AFR][1000 genomes]
rs73436377	0.85[AFR][1000 genomes]
rs73436397	0.96[AFR][1000 genomes]
rs73436400	0.96[AFR][1000 genomes]
rs73438403	0.94[AFR][1000 genomes]
rs73438405	0.96[AFR][1000 genomes]
rs73438414	0.96[AFR][1000 genomes]
rs73438446	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73438458	0.92[AFR][1000 genomes]
rs73438466	0.82[AFR][1000 genomes]
rs8028169	0.96[AFR][1000 genomes]
rs8033167	0.96[AFR][1000 genomes]
rs8192354	0.96[AFR][1000 genomes]
rs8192359	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8192360	0.96[AFR][1000 genomes]
rs8192365	0.96[AFR][1000 genomes]
rs8192367	0.92[AFR][1000 genomes]
rs8192379	0.96[AFR][1000 genomes]
rs8192387	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8192393	0.96[AFR][1000 genomes]
rs8192397	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8192400	1.00[EUR][1000 genomes]
rs8192408	0.94[AFR][1000 genomes]
rs8192412	0.96[AFR][1000 genomes]
rs8192413	0.96[AFR][1000 genomes]
rs8192418	0.90[AFR][1000 genomes]
rs890312	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9806184	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9806204	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431395	chr15:72266174-72701777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv530817	chr15:72350885-72773374	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
3	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72519600-72524800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr15:72520600-72524400	Active TSS	Breast Myoepithelial Primary Cells	Breast
3	chr15:72520800-72524600	Active TSS	Placenta Amnion	Placenta Amnion
4	chr15:72520800-72525000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr15:72521000-72525000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr15:72521200-72524600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
7	chr15:72521400-72524400	Active TSS	Esophagus	oesophagus
8	chr15:72521400-72524400	Active TSS	Gastric	stomach
9	chr15:72521400-72524600	Active TSS	Psoas Muscle	Psoas
10	chr15:72521400-72524800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr15:72521400-72525000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr15:72521600-72524400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr15:72521600-72524800	Active TSS	HSMM	muscle
14	chr15:72521800-72524400	Active TSS	ES-I3 Cell Line	embryonic stem cell
15	chr15:72521800-72524400	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr15:72521800-72524400	Active TSS	iPS-15b Cell Line	embryonic stem cell
17	chr15:72521800-72524400	Active TSS	Lung	lung
18	chr15:72521800-72524400	Active TSS	Ovary	ovary
19	chr15:72521800-72524400	Active TSS	HSMMtube	muscle
20	chr15:72521800-72524600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr15:72521800-72524600	Flanking Active TSS	Primary hematopoietic stem cells	blood
22	chr15:72521800-72524600	Active TSS	Aorta	Aorta
23	chr15:72521800-72524800	Active TSS	Pancreatic Islets	Pancreatic Islet
24	chr15:72521800-72524800	Active TSS	NHDF-Ad	bronchial
25	chr15:72522000-72524400	Active TSS	H1 Cell Line	embryonic stem cell
26	chr15:72522000-72524400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr15:72522000-72524400	Active TSS	H9 Cell Line	embryonic stem cell
28	chr15:72522000-72524400	Active TSS	HUES48 Cell Line	embryonic stem cell
29	chr15:72522000-72524400	Active TSS	HUES6 Cell Line	embryonic stem cell
30	chr15:72522000-72524400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr15:72522000-72524400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr15:72522000-72524400	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
33	chr15:72522000-72524400	Active TSS	Primary T killer memory cells from peripheral blood	blood
34	chr15:72522000-72524400	Flanking Active TSS	Liver	Liver
35	chr15:72522000-72524400	Active TSS	Brain Hippocampus Middle	brain
36	chr15:72522000-72524400	Active TSS	Fetal Intestine Large	intestine
37	chr15:72522000-72524400	Active TSS	Fetal Intestine Small	intestine
38	chr15:72522000-72524400	Active TSS	Pancreas	Pancrea
39	chr15:72522000-72524400	Active TSS	Sigmoid Colon	Sigmoid Colon
40	chr15:72522000-72524400	Active TSS	Small Intestine	intestine
41	chr15:72522000-72524400	Active TSS	NH-A	brain
42	chr15:72522000-72524400	Active TSS	NHEK	skin
43	chr15:72522000-72524400	Active TSS	NHLF	lung
44	chr15:72522000-72524600	Active TSS	HUES64 Cell Line	embryonic stem cell
45	chr15:72522000-72524600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr15:72522000-72524600	Active TSS	Brain Inferior Temporal Lobe	brain
47	chr15:72522000-72524600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
48	chr15:72522000-72524600	Active TSS	Left Ventricle	heart
49	chr15:72522000-72524600	Active TSS	Rectal Mucosa Donor 29	rectum
50	chr15:72522000-72524600	Active TSS	Right Ventricle	heart

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