Variant report

Variant	rs34362323
Chromosome Location	chr15:72378594-72378595
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:72378259..72378845-chr15:72448189..72448926,2	MCF-7	breast:

Extended variants
information (count: 144 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:132)

rs_ID	r²[population]
rs10518987	0.94[ASN][1000 genomes]
rs10732234	1.00[AMR][1000 genomes]
rs11632505	0.88[ASN][1000 genomes]
rs12324744	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12902160	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12902421	1.00[AMR][1000 genomes]
rs12905794	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12905947	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12906244	1.00[AMR][1000 genomes]
rs12906356	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12906612	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12907087	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12907359	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12907377	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12907707	0.88[ASN][1000 genomes]
rs12908241	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12908863	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12909590	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12910475	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12910620	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12911278	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12911285	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12914208	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12914269	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12914312	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12915008	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12916039	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12916226	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12916298	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12916789	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12917442	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1426169	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2277543	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2288257	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2291276	1.00[AMR][1000 genomes]
rs2306578	1.00[AMR][1000 genomes]
rs2912203	0.88[ASN][1000 genomes]
rs2912204	0.88[ASN][1000 genomes]
rs2912222	0.88[ASN][1000 genomes]
rs2912224	0.88[ASN][1000 genomes]
rs2912225	0.88[ASN][1000 genomes]
rs2957751	0.94[ASN][1000 genomes]
rs2957752	1.00[ASN][1000 genomes]
rs2959916	0.88[ASN][1000 genomes]
rs2959917	0.88[ASN][1000 genomes]
rs2959918	0.88[ASN][1000 genomes]
rs2959919	0.88[ASN][1000 genomes]
rs2959923	0.88[ASN][1000 genomes]
rs2959924	0.88[ASN][1000 genomes]
rs2959927	0.88[ASN][1000 genomes]
rs2959929	0.88[ASN][1000 genomes]
rs2959931	0.88[ASN][1000 genomes]
rs2959933	0.88[ASN][1000 genomes]
rs2959935	0.88[ASN][1000 genomes]
rs34023258	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34115124	0.88[ASN][1000 genomes]
rs34211376	0.88[ASN][1000 genomes]
rs34294127	1.00[ASN][1000 genomes]
rs34346715	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs34382909	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs34454276	1.00[AMR][1000 genomes]
rs34481625	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34505994	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34511502	0.88[ASN][1000 genomes]
rs34538801	0.88[ASN][1000 genomes]
rs34638996	1.00[AMR][1000 genomes]
rs34658339	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs34677662	0.88[ASN][1000 genomes]
rs34694253	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34705283	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34789424	0.88[ASN][1000 genomes]
rs34815962	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs35061524	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35071085	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35104697	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs35135570	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35136885	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35144689	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35145719	1.00[AMR][1000 genomes]
rs35200902	1.00[AMR][1000 genomes]
rs35202897	0.88[ASN][1000 genomes]
rs35259670	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35285520	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs35288005	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs35362359	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35378070	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs35408293	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35457238	0.88[ASN][1000 genomes]
rs35491098	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35554838	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35694406	0.94[ASN][1000 genomes]
rs35836103	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs36032558	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs36110969	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3743227	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3743228	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3743229	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3759817	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3759819	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3759821	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3759901	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3825949	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs55935015	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57420281	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs57692836	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs58352854	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs66608810	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs67195650	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs71395046	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs71395049	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs71395050	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs71395056	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71395057	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71395058	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71395061	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71395066	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs71395068	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs71395070	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs71395074	0.88[ASN][1000 genomes]
rs71397231	0.88[ASN][1000 genomes]
rs71397232	0.88[ASN][1000 genomes]
rs71397233	0.88[ASN][1000 genomes]
rs71411063	0.88[ASN][1000 genomes]
rs7169150	0.94[ASN][1000 genomes]
rs7174264	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs73438446	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs8192359	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs8192387	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs8192397	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs890312	1.00[AMR][1000 genomes]
rs9806184	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9806204	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3331306	chr15:72049818-72427559	Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv3433206	chr15:72049838-72427529	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv1042740	chr15:72128799-72482239	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	nsv542426	chr15:72128799-72482239	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
5	nsv431395	chr15:72266174-72701777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
6	nsv833051	chr15:72315471-72508429	Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
7	nsv530817	chr15:72350885-72773374	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
8	esv11550	chr15:72353301-72395288	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv904337	chr15:72361942-72390515	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv869747	chr15:72372245-72403103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
12	nsv510665	chr15:72374862-72407548	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72351200-72395800	Weak transcription	Rectal Smooth Muscle	rectum
2	chr15:72353600-72379600	Weak transcription	Primary T cells from cord blood	blood
3	chr15:72361600-72390600	Weak transcription	Aorta	Aorta
4	chr15:72361600-72391400	Weak transcription	Ovary	ovary
5	chr15:72367200-72407600	Weak transcription	Stomach Smooth Muscle	stomach
6	chr15:72370800-72378600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr15:72371400-72379600	Weak transcription	Brain Anterior Caudate	brain
8	chr15:72372200-72399400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr15:72373600-72394400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr15:72375000-72379400	Weak transcription	Right Ventricle	heart
11	chr15:72375000-72408200	Weak transcription	Primary B cells from cord blood	blood
12	chr15:72375200-72378800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr15:72375800-72395600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr15:72376400-72381400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr15:72376800-72379000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr15:72376800-72379200	Enhancers	HSMMtube	muscle
17	chr15:72377000-72378800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr15:72377000-72379800	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr15:72377200-72388200	Weak transcription	Fetal Brain Female	brain
20	chr15:72377400-72378600	ZNF genes & repeats	Fetal Intestine Small	intestine
21	chr15:72377400-72379400	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr15:72377600-72381800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr15:72377800-72380000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr15:72377800-72380600	Weak transcription	NHLF	lung
25	chr15:72377800-72397600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr15:72378000-72380200	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr15:72378200-72379000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr15:72378200-72379000	Enhancers	Fetal Heart	heart
29	chr15:72378200-72379000	Enhancers	Fetal Muscle Leg	muscle
30	chr15:72378200-72379000	ZNF genes & repeats	Fetal Stomach	stomach
31	chr15:72378200-72379800	Enhancers	Fetal Muscle Trunk	muscle
32	chr15:72378400-72378600	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
33	chr15:72378400-72378600	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr15:72378400-72379000	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr15:72378400-72379000	Enhancers	Gastric	stomach
36	chr15:72378400-72379000	Genic enhancers	Lung	lung
37	chr15:72378400-72379000	Enhancers	Pancreas	Pancrea
38	chr15:72378400-72379200	Genic enhancers	Esophagus	oesophagus
39	chr15:72378400-72379200	Enhancers	Right Atrium	heart
40	chr15:72378400-72379200	Enhancers	Stomach Mucosa	stomach
41	chr15:72378400-72379400	Enhancers	Sigmoid Colon	Sigmoid Colon
42	chr15:72378400-72379600	Enhancers	Skeletal Muscle Male	skeletal muscle
43	chr15:72378400-72379800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr15:72378400-72380000	Enhancers	Left Ventricle	heart
45	chr15:72378400-72380200	Enhancers	Psoas Muscle	Psoas
46	chr15:72378400-72383600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr15:72378400-72388400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr15:72378400-72388600	Weak transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links