The 2.0 version of rSNPBase

Variant report

Variant rs12916039
Chromosome Location chr15:72407379-72407380
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:60 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:72367200-72407600 Weak transcription Stomach Smooth Muscle stomach
2 chr15:72375000-72408200 Weak transcription Primary B cells from cord blood blood
3 chr15:72379000-72407800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
4 chr15:72380000-72407600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
5 chr15:72390400-72407600 Weak transcription Primary T helper naive cells from peripheral blood blood
6 chr15:72395800-72407800 Weak transcription HMEC breast
7 chr15:72395800-72409000 Weak transcription Sigmoid Colon Sigmoid Colon
8 chr15:72395800-72409200 Weak transcription Gastric stomach
9 chr15:72396400-72408800 Weak transcription Right Ventricle heart
10 chr15:72396600-72408200 Weak transcription Primary hematopoietic stem cells short term culture blood
11 chr15:72397800-72408200 Weak transcription Brain Angular Gyrus brain
12 chr15:72397800-72408200 Weak transcription Duodenum Smooth Muscle Duodenum
13 chr15:72399800-72408800 Weak transcription ES-I3 Cell Line embryonic stem cell
14 chr15:72401600-72409200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
15 chr15:72402600-72407800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
16 chr15:72404000-72408400 Enhancers Breast Myoepithelial Primary Cells Breast
17 chr15:72404000-72408600 Enhancers Skeletal Muscle Male skeletal muscle
18 chr15:72404200-72408000 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
19 chr15:72404200-72408200 Enhancers Fetal Lung lung
20 chr15:72404200-72408800 Enhancers Colon Smooth Muscle Colon
21 chr15:72405000-72407800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
22 chr15:72405200-72408200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
23 chr15:72405400-72407400 Enhancers Fetal Heart heart
24 chr15:72405400-72408600 Enhancers Skeletal Muscle Female skeletal muscle
25 chr15:72405800-72407800 Weak transcription Rectal Smooth Muscle rectum
26 chr15:72405800-72408200 Enhancers NHDF-Ad bronchial
27 chr15:72405800-72408800 Active TSS GM12878-XiMat blood
28 chr15:72406000-72407600 Weak transcription Fetal Brain Female brain
29 chr15:72406000-72407800 Weak transcription Primary T helper naive cells fromperipheralblood blood
30 chr15:72406000-72407800 Weak transcription Muscle Satellite Cultured Cells --
31 chr15:72406000-72408400 Enhancers Brain Anterior Caudate brain
32 chr15:72406000-72408800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
33 chr15:72406200-72407600 Weak transcription Dnd41 blood
34 chr15:72406200-72407600 Weak transcription HSMMtube muscle
35 chr15:72406200-72407800 Weak transcription NHLF lung
36 chr15:72406200-72408800 Weak transcription HSMM muscle
37 chr15:72406400-72407600 Weak transcription Fetal Kidney kidney
38 chr15:72406400-72407800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
39 chr15:72406400-72407800 Enhancers Brain Inferior Temporal Lobe brain
40 chr15:72406400-72408200 Weak transcription Primary T helper cells fromperipheralblood blood
41 chr15:72406400-72408200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
42 chr15:72406400-72408400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
43 chr15:72406400-72408600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
44 chr15:72406400-72408600 Weak transcription Cortex derived primary cultured neurospheres brain
45 chr15:72406600-72407600 Weak transcription HepG2 liver
46 chr15:72406600-72407800 Enhancers Psoas Muscle Psoas
47 chr15:72406600-72409200 Weak transcription Stomach Mucosa stomach
48 chr15:72406800-72407600 Weak transcription Brain Cingulate Gyrus brain
49 chr15:72406800-72407600 Weak transcription Brain Germinal Matrix brain
50 chr15:72406800-72408200 Weak transcription Pancreatic Islets Pancreatic Islet

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Last update: Aug 31, 2015