Variant report

Variant	rs28414926
Chromosome Location	chr15:72471077-72471078
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:72469515..72473441-chr15:72475665..72477509,3	K562	blood:
2	chr15:72466804..72468796-chr15:72469087..72471853,2	MCF-7	breast:
3	chr15:72465996..72467606-chr15:72469217..72471235,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000175318	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10083583	0.89[AFR][1000 genomes]
rs12324744	0.83[AFR][1000 genomes]
rs12907087	0.83[AFR][1000 genomes]
rs12907377	0.83[AFR][1000 genomes]
rs12911285	0.83[AFR][1000 genomes]
rs12914269	0.83[AFR][1000 genomes]
rs13379635	0.80[AFR][1000 genomes]
rs1426169	0.83[AFR][1000 genomes]
rs2415133	0.93[AFR][1000 genomes]
rs28478122	0.80[AFR][1000 genomes]
rs34346715	0.83[AFR][1000 genomes]
rs34382909	0.83[AFR][1000 genomes]
rs35104697	0.83[AFR][1000 genomes]
rs35694406	0.82[AFR][1000 genomes]
rs36110969	0.83[AFR][1000 genomes]
rs3743227	0.83[AFR][1000 genomes]
rs3743228	0.83[AFR][1000 genomes]
rs3743229	0.83[AFR][1000 genomes]
rs56820256	0.80[AFR][1000 genomes]
rs57420281	0.83[AFR][1000 genomes]
rs57595193	0.89[AFR][1000 genomes]
rs57692836	0.83[AFR][1000 genomes]
rs58352854	0.83[AFR][1000 genomes]
rs59572935	0.80[AFR][1000 genomes]
rs60350471	0.87[AFR][1000 genomes]
rs60543967	0.84[AFR][1000 genomes]
rs60600349	0.85[AFR][1000 genomes]
rs61109283	0.93[AFR][1000 genomes]
rs6494994	0.87[AFR][1000 genomes]
rs67195650	0.83[AFR][1000 genomes]
rs7174264	0.83[AFR][1000 genomes]
rs73434377	0.80[AFR][1000 genomes]
rs73436326	0.84[AFR][1000 genomes]
rs73436327	0.82[AFR][1000 genomes]
rs73436332	0.82[AFR][1000 genomes]
rs73436365	0.98[AFR][1000 genomes]
rs73436366	0.98[AFR][1000 genomes]
rs73436377	0.98[AFR][1000 genomes]
rs73436397	0.87[AFR][1000 genomes]
rs73436400	0.87[AFR][1000 genomes]
rs73438403	0.85[AFR][1000 genomes]
rs73438405	0.87[AFR][1000 genomes]
rs73438414	0.87[AFR][1000 genomes]
rs73438446	0.85[AFR][1000 genomes]
rs73438458	0.87[AFR][1000 genomes]
rs73438466	0.81[AFR][1000 genomes]
rs8028169	0.87[AFR][1000 genomes]
rs8033167	0.87[AFR][1000 genomes]
rs8192354	0.87[AFR][1000 genomes]
rs8192360	0.87[AFR][1000 genomes]
rs8192365	0.87[AFR][1000 genomes]
rs8192367	0.83[AFR][1000 genomes]
rs8192379	0.87[AFR][1000 genomes]
rs8192393	0.87[AFR][1000 genomes]
rs8192408	0.85[AFR][1000 genomes]
rs8192412	0.87[AFR][1000 genomes]
rs8192413	0.87[AFR][1000 genomes]
rs8192418	0.93[AFR][1000 genomes]
rs9806184	0.83[AFR][1000 genomes]
rs9806204	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042740	chr15:72128799-72482239	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv542426	chr15:72128799-72482239	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv431395	chr15:72266174-72701777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
4	nsv833051	chr15:72315471-72508429	Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv530817	chr15:72350885-72773374	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
6	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72454400-72471400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr15:72462000-72471400	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr15:72463600-72472200	Weak transcription	Fetal Intestine Small	intestine
4	chr15:72465000-72476200	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr15:72466600-72471200	Enhancers	Placenta	Placenta
6	chr15:72466600-72472400	Enhancers	HMEC	breast
7	chr15:72466800-72476200	Weak transcription	Esophagus	oesophagus
8	chr15:72467600-72471600	Weak transcription	Lung	lung
9	chr15:72467800-72471400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr15:72468000-72476000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr15:72468400-72473200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr15:72468400-72476000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr15:72469000-72472000	Weak transcription	Right Atrium	heart
14	chr15:72469000-72475000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr15:72469200-72471600	Weak transcription	Brain Cingulate Gyrus	brain
16	chr15:72469200-72471600	Weak transcription	Fetal Muscle Leg	muscle
17	chr15:72469800-72471200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr15:72469800-72471400	Weak transcription	Brain Hippocampus Middle	brain
19	chr15:72470000-72472200	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr15:72470200-72473600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr15:72471000-72472000	Weak transcription	Pancreas	Pancrea

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