Variant report

Variant	rs16956213
Chromosome Location	chr15:72084389-72084390
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:72037094..72041043-chr15:72082169..72084915,5	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10048041	1.00[AMR][1000 genomes]
rs10518975	1.00[AMR][1000 genomes]
rs13329355	1.00[AMR][1000 genomes]
rs13379549	1.00[AMR][1000 genomes]
rs13379635	1.00[AMR][1000 genomes]
rs16956198	0.84[YRI][hapmap]
rs16956251	1.00[AMR][1000 genomes]
rs16956307	1.00[AMR][1000 genomes]
rs16956355	1.00[AMR][1000 genomes]
rs28405881	1.00[AMR][1000 genomes]
rs28478122	1.00[AMR][1000 genomes]
rs28542248	1.00[AMR][1000 genomes]
rs28556992	1.00[AMR][1000 genomes]
rs28589295	1.00[AMR][1000 genomes]
rs56820256	1.00[AMR][1000 genomes]
rs59572935	1.00[AMR][1000 genomes]
rs61026619	1.00[AMR][1000 genomes]
rs7176558	1.00[AMR][1000 genomes]
rs73432496	1.00[AMR][1000 genomes]
rs73432498	1.00[AMR][1000 genomes]
rs73434307	1.00[AMR][1000 genomes]
rs73434311	1.00[AMR][1000 genomes]
rs73434331	1.00[AMR][1000 genomes]
rs73434332	1.00[AMR][1000 genomes]
rs73434358	1.00[AMR][1000 genomes]
rs73434377	1.00[AMR][1000 genomes]
rs73434390	1.00[AMR][1000 genomes]
rs73434401	1.00[AMR][1000 genomes]
rs73436314	1.00[AMR][1000 genomes]
rs73436315	1.00[AMR][1000 genomes]
rs73436318	1.00[AMR][1000 genomes]
rs748471	1.00[AMR][1000 genomes]
rs748473	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904334	chr15:71737376-72177659	Strong transcription Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1036938	chr15:71948106-72272855	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	esv3331306	chr15:72049818-72427559	Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	esv3433206	chr15:72049838-72427529	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72072000-72093200	Weak transcription	Fetal Stomach	stomach
2	chr15:72076000-72099000	Weak transcription	Right Atrium	heart
3	chr15:72076400-72084400	Weak transcription	Fetal Heart	heart
4	chr15:72076400-72084400	Weak transcription	Fetal Muscle Trunk	muscle
5	chr15:72079400-72085200	Enhancers	HUVEC	blood vessel
6	chr15:72080800-72084800	Enhancers	Fetal Intestine Small	intestine
7	chr15:72080800-72085200	Enhancers	Fetal Intestine Large	intestine
8	chr15:72080800-72085200	Enhancers	Placenta	Placenta
9	chr15:72081400-72085200	Enhancers	HMEC	breast
10	chr15:72081800-72085200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr15:72081800-72085200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr15:72081800-72085200	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr15:72082000-72084400	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr15:72082000-72084800	Enhancers	Pancreas	Pancrea
15	chr15:72082000-72085200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr15:72082000-72085400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr15:72082200-72085200	Enhancers	NH-A	brain
18	chr15:72082200-72085400	Enhancers	Muscle Satellite Cultured Cells	--
19	chr15:72082200-72085400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr15:72082400-72085200	Enhancers	Osteobl	bone
21	chr15:72082400-72085400	Enhancers	NHEK	skin
22	chr15:72083200-72084400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr15:72083200-72084600	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr15:72083200-72085000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr15:72083600-72084800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr15:72083600-72085200	Enhancers	HSMMtube	muscle
27	chr15:72083800-72085200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr15:72083800-72085200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr15:72083800-72085200	Enhancers	HSMM	muscle
30	chr15:72083800-72085200	Enhancers	NHDF-Ad	bronchial
31	chr15:72083800-72085400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr15:72084000-72085200	Enhancers	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links