The 2.0 version of rSNPBase

Variant report

Variant rs28589295
Chromosome Location chr15:72048752-72048753
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:46 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:72017000-72048800 Weak transcription Placenta Placenta
2 chr15:72021600-72071400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
3 chr15:72030400-72075800 Weak transcription Right Ventricle heart
4 chr15:72036400-72071400 Weak transcription Fetal Lung lung
5 chr15:72039400-72050200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
6 chr15:72040600-72054200 Weak transcription Fetal Adrenal Gland Adrenal Gland
7 chr15:72041000-72050200 Weak transcription Lung lung
8 chr15:72041400-72050200 Weak transcription Colonic Mucosa Colon
9 chr15:72041400-72054200 Weak transcription Gastric stomach
10 chr15:72042000-72056800 Weak transcription Stomach Smooth Muscle stomach
11 chr15:72043200-72050200 Weak transcription Esophagus oesophagus
12 chr15:72043400-72049000 Weak transcription Fetal Stomach stomach
13 chr15:72043400-72049400 Weak transcription Fetal Muscle Trunk muscle
14 chr15:72044200-72049000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
15 chr15:72045200-72050200 Weak transcription Liver Liver
16 chr15:72045400-72049000 Weak transcription HepG2 liver
17 chr15:72045400-72050200 Weak transcription Duodenum Mucosa Duodenum
18 chr15:72045600-72050600 Weak transcription Fetal Kidney kidney
19 chr15:72045600-72073000 Weak transcription Duodenum Smooth Muscle Duodenum
20 chr15:72045800-72049400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
21 chr15:72046000-72050200 Weak transcription Small Intestine intestine
22 chr15:72046000-72052000 Strong transcription Breast Myoepithelial Primary Cells Breast
23 chr15:72046000-72054400 Weak transcription Fetal Heart heart
24 chr15:72046200-72049000 Weak transcription Fetal Muscle Leg muscle
25 chr15:72046200-72050200 Weak transcription Pancreas Pancrea
26 chr15:72046200-72052000 Weak transcription NHLF lung
27 chr15:72046200-72054000 Weak transcription Osteobl bone
28 chr15:72046200-72057200 Weak transcription Aorta Aorta
29 chr15:72046400-72052000 Weak transcription Muscle Satellite Cultured Cells --
30 chr15:72046400-72052200 Weak transcription HMEC breast
31 chr15:72046400-72052400 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
32 chr15:72046400-72052600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
33 chr15:72046400-72054000 Weak transcription Placenta Amnion Placenta Amnion
34 chr15:72046600-72049200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
35 chr15:72047400-72052400 Enhancers Fetal Intestine Large intestine
36 chr15:72047800-72051400 Strong transcription A549 lung
37 chr15:72047800-72051800 Enhancers Fetal Intestine Small intestine
38 chr15:72048000-72050400 Weak transcription Rectal Mucosa Donor 29 rectum
39 chr15:72048000-72051600 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
40 chr15:72048200-72051000 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
41 chr15:72048200-72053200 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
42 chr15:72048400-72050200 Weak transcription Sigmoid Colon Sigmoid Colon
43 chr15:72048400-72051000 Strong transcription NHEK skin
44 chr15:72048600-72050200 Weak transcription Left Ventricle heart
45 chr15:72048600-72050200 Weak transcription Rectal Mucosa Donor 31 rectum
46 chr15:72048600-72054000 Weak transcription Stomach Mucosa stomach

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Last update: Aug 31, 2015