Variant report

Variant	rs61026619
Chromosome Location	chr15:72093566-72093567
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:72072491..72073409-chr15:72093417..72094287,4	MCF-7	breast:
2	chr15:72093317..72095057-chr15:72097968..72100782,2	MCF-7	breast:
3	chr15:72035964..72037219-chr15:72093215..72094100,4	MCF-7	breast:
4	chr15:72077106..72077690-chr15:72093191..72094031,2	MCF-7	breast:
5	chr15:71825065..71825962-chr15:72093214..72094002,2	MCF-7	breast:
6	chr15:72081235..72083430-chr15:72092419..72093932,2	MCF-7	breast:
7	chr15:71266071..71266594-chr15:72093209..72094086,2	MCF-7	breast:
8	chr15:72035959..72036924-chr15:72093401..72094192,4	K562	blood:
9	chr15:72093395..72094147-chr15:72448020..72448826,2	K562	blood:

No data

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10048041	1.00[AMR][1000 genomes]
rs10518975	1.00[AMR][1000 genomes]
rs13329355	1.00[AMR][1000 genomes]
rs13379549	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13379635	1.00[AMR][1000 genomes]
rs16956213	1.00[AMR][1000 genomes]
rs16956251	1.00[AMR][1000 genomes]
rs16956307	1.00[AMR][1000 genomes]
rs16956355	1.00[AMR][1000 genomes]
rs28405881	1.00[AMR][1000 genomes]
rs28478122	1.00[AMR][1000 genomes]
rs28542248	1.00[AMR][1000 genomes]
rs28556992	1.00[AMR][1000 genomes]
rs28589295	1.00[AMR][1000 genomes]
rs56820256	1.00[AMR][1000 genomes]
rs59572935	1.00[AMR][1000 genomes]
rs7176558	1.00[AMR][1000 genomes]
rs73432477	0.80[AFR][1000 genomes]
rs73432496	1.00[AMR][1000 genomes]
rs73432498	1.00[AMR][1000 genomes]
rs73434307	1.00[AMR][1000 genomes]
rs73434311	1.00[AMR][1000 genomes]
rs73434331	1.00[AMR][1000 genomes]
rs73434332	1.00[AMR][1000 genomes]
rs73434358	1.00[AMR][1000 genomes]
rs73434377	1.00[AMR][1000 genomes]
rs73434390	1.00[AMR][1000 genomes]
rs73434401	1.00[AMR][1000 genomes]
rs73436314	1.00[AMR][1000 genomes]
rs73436315	1.00[AMR][1000 genomes]
rs73436318	1.00[AMR][1000 genomes]
rs748471	1.00[AMR][1000 genomes]
rs748473	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904334	chr15:71737376-72177659	Strong transcription Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1036938	chr15:71948106-72272855	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	esv3331306	chr15:72049818-72427559	Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	esv3433206	chr15:72049838-72427529	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72076000-72099000	Weak transcription	Right Atrium	heart
2	chr15:72084800-72097000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr15:72084800-72098800	Weak transcription	Pancreas	Pancrea
4	chr15:72085400-72098600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr15:72091400-72096600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr15:72091400-72098600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr15:72091600-72096600	Weak transcription	HMEC	breast
8	chr15:72092400-72093600	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr15:72092400-72094000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr15:72092400-72094000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr15:72092400-72094200	Enhancers	Hela-S3	cervix
12	chr15:72092600-72093600	Enhancers	Colonic Mucosa	Colon
13	chr15:72092600-72093600	Enhancers	HSMM	muscle
14	chr15:72092600-72094000	Enhancers	NHLF	lung
15	chr15:72093000-72093600	Enhancers	Fetal Lung	lung
16	chr15:72093200-72093600	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr15:72093200-72093600	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr15:72093200-72093600	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr15:72093200-72093600	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr15:72093200-72093600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr15:72093200-72093600	Enhancers	Muscle Satellite Cultured Cells	--
22	chr15:72093200-72093600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
23	chr15:72093200-72093600	Enhancers	Fetal Heart	heart
24	chr15:72093200-72093600	Enhancers	Fetal Stomach	stomach
25	chr15:72093200-72093600	Enhancers	Rectal Mucosa Donor 29	rectum
26	chr15:72093200-72093600	Enhancers	NH-A	brain
27	chr15:72093200-72093600	Enhancers	Osteobl	bone
28	chr15:72093200-72093800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr15:72093200-72093800	Flanking Active TSS	A549	lung
30	chr15:72093200-72094000	Enhancers	H9 Cell Line	embryonic stem cell
31	chr15:72093200-72094000	Enhancers	Fetal Muscle Trunk	muscle
32	chr15:72093200-72094000	Enhancers	Fetal Muscle Leg	muscle
33	chr15:72093400-72093600	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr15:72093400-72093600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
35	chr15:72093400-72093600	Enhancers	Fetal Kidney	kidney
36	chr15:72093400-72093600	Enhancers	HSMMtube	muscle
37	chr15:72093400-72094000	Enhancers	Fetal Intestine Small	intestine
38	chr15:72093400-72098600	Weak transcription	HUVEC	blood vessel

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