Variant report

Variant	rs13379549
Chromosome Location	chr15:72094567-72094568
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:72093317..72095057-chr15:72097968..72100782,2	MCF-7	breast:
2	chr15:72094281..72095669-chr15:72448048..72449003,4	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10048041	1.00[AMR][1000 genomes]
rs10518975	1.00[AMR][1000 genomes]
rs13329355	1.00[AMR][1000 genomes]
rs13379635	1.00[AMR][1000 genomes]
rs16956213	1.00[AMR][1000 genomes]
rs16956251	1.00[AMR][1000 genomes]
rs16956307	1.00[AMR][1000 genomes]
rs16956355	1.00[AMR][1000 genomes]
rs28405881	1.00[AMR][1000 genomes]
rs28478122	1.00[AMR][1000 genomes]
rs28542248	1.00[AMR][1000 genomes]
rs28556992	1.00[AMR][1000 genomes]
rs28589295	1.00[AMR][1000 genomes]
rs56820256	1.00[AMR][1000 genomes]
rs59572935	1.00[AMR][1000 genomes]
rs61026619	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7176558	1.00[AMR][1000 genomes]
rs73432496	1.00[AMR][1000 genomes]
rs73432498	1.00[AMR][1000 genomes]
rs73434307	1.00[AMR][1000 genomes]
rs73434311	1.00[AMR][1000 genomes]
rs73434331	1.00[AMR][1000 genomes]
rs73434332	1.00[AMR][1000 genomes]
rs73434358	1.00[AMR][1000 genomes]
rs73434377	1.00[AMR][1000 genomes]
rs73434390	1.00[AMR][1000 genomes]
rs73434401	1.00[AMR][1000 genomes]
rs73436314	1.00[AMR][1000 genomes]
rs73436315	1.00[AMR][1000 genomes]
rs73436318	1.00[AMR][1000 genomes]
rs748471	1.00[AMR][1000 genomes]
rs748473	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904334	chr15:71737376-72177659	Strong transcription Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1036938	chr15:71948106-72272855	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	esv3331306	chr15:72049818-72427559	Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	esv3433206	chr15:72049838-72427529	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72076000-72099000	Weak transcription	Right Atrium	heart
2	chr15:72084800-72097000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr15:72084800-72098800	Weak transcription	Pancreas	Pancrea
4	chr15:72085400-72098600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr15:72091400-72096600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr15:72091400-72098600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr15:72091600-72096600	Weak transcription	HMEC	breast
8	chr15:72093400-72098600	Weak transcription	HUVEC	blood vessel
9	chr15:72093600-72096200	Weak transcription	Fetal Heart	heart
10	chr15:72093600-72096200	Weak transcription	HSMMtube	muscle
11	chr15:72093600-72096600	Weak transcription	HSMM	muscle
12	chr15:72093600-72097000	Weak transcription	Fetal Lung	lung
13	chr15:72093600-72097200	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr15:72093600-72098600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr15:72093600-72098600	Weak transcription	Fetal Stomach	stomach
16	chr15:72093600-72098600	Weak transcription	NH-A	brain
17	chr15:72093600-72098600	Weak transcription	Osteobl	bone
18	chr15:72093600-72098800	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr15:72093600-72098800	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr15:72093600-72098800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr15:72093600-72098800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr15:72093600-72100200	Weak transcription	Fetal Kidney	kidney
23	chr15:72094000-72094600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr15:72094000-72094800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr15:72094000-72095000	Weak transcription	Fetal Muscle Trunk	muscle
26	chr15:72094000-72095000	Weak transcription	Fetal Muscle Leg	muscle
27	chr15:72094000-72096800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr15:72094000-72097200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr15:72094000-72098600	Weak transcription	Fetal Intestine Small	intestine
30	chr15:72094000-72098600	Weak transcription	NHLF	lung
31	chr15:72094000-72099000	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr15:72094200-72098800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr15:72094200-72098800	Weak transcription	Hela-S3	cervix
34	chr15:72094400-72096600	Weak transcription	A549	lung

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