Variant report

Variant	rs13329355
Chromosome Location	chr15:72051521-72051522
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:72051438..72054310-chr15:72082201..72084354,2	MCF-7	breast:
2	chr15:72050208..72052431-chr15:72052692..72054647,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10048041	1.00[AMR][1000 genomes]
rs10518975	1.00[AMR][1000 genomes]
rs13379549	1.00[AMR][1000 genomes]
rs13379635	1.00[AMR][1000 genomes]
rs16956213	1.00[AMR][1000 genomes]
rs16956251	1.00[AMR][1000 genomes]
rs16956307	1.00[AMR][1000 genomes]
rs16956355	1.00[AMR][1000 genomes]
rs28405881	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28478122	1.00[AMR][1000 genomes]
rs28542248	1.00[AMR][1000 genomes]
rs28556992	1.00[AMR][1000 genomes]
rs28589295	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56820256	1.00[AMR][1000 genomes]
rs59572935	1.00[AMR][1000 genomes]
rs61026619	1.00[AMR][1000 genomes]
rs7176558	1.00[AMR][1000 genomes]
rs73432496	1.00[AMR][1000 genomes]
rs73432498	1.00[AMR][1000 genomes]
rs73434307	1.00[AMR][1000 genomes]
rs73434311	1.00[AMR][1000 genomes]
rs73434331	1.00[AMR][1000 genomes]
rs73434332	1.00[AMR][1000 genomes]
rs73434358	1.00[AMR][1000 genomes]
rs73434377	1.00[AMR][1000 genomes]
rs73434390	1.00[AMR][1000 genomes]
rs73434401	1.00[AMR][1000 genomes]
rs748471	1.00[AMR][1000 genomes]
rs748473	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904334	chr15:71737376-72177659	Strong transcription Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1036938	chr15:71948106-72272855	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv904335	chr15:72018469-72064719	Enhancers Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3331306	chr15:72049818-72427559	Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	esv3433206	chr15:72049838-72427529	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72021600-72071400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:72030400-72075800	Weak transcription	Right Ventricle	heart
3	chr15:72036400-72071400	Weak transcription	Fetal Lung	lung
4	chr15:72040600-72054200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr15:72041400-72054200	Weak transcription	Gastric	stomach
6	chr15:72042000-72056800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr15:72045600-72073000	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr15:72046000-72052000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
9	chr15:72046000-72054400	Weak transcription	Fetal Heart	heart
10	chr15:72046200-72052000	Weak transcription	NHLF	lung
11	chr15:72046200-72054000	Weak transcription	Osteobl	bone
12	chr15:72046200-72057200	Weak transcription	Aorta	Aorta
13	chr15:72046400-72052000	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr15:72046400-72052200	Weak transcription	HMEC	breast
15	chr15:72046400-72052400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr15:72046400-72052600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr15:72046400-72054000	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr15:72047400-72052400	Enhancers	Fetal Intestine Large	intestine
19	chr15:72047800-72051800	Enhancers	Fetal Intestine Small	intestine
20	chr15:72048000-72051600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr15:72048200-72053200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr15:72048600-72054000	Weak transcription	Stomach Mucosa	stomach
23	chr15:72049200-72052600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr15:72050200-72052400	Strong transcription	Liver	Liver
25	chr15:72050200-72054000	Weak transcription	HepG2	liver
26	chr15:72050400-72052600	Enhancers	Rectal Mucosa Donor 29	rectum
27	chr15:72050400-72056800	Weak transcription	Pancreas	Pancrea
28	chr15:72050600-72051600	Enhancers	Fetal Kidney	kidney
29	chr15:72050600-72052000	Weak transcription	Left Ventricle	heart
30	chr15:72050600-72052400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr15:72050600-72052400	Weak transcription	Fetal Stomach	stomach
32	chr15:72050600-72056800	Weak transcription	Esophagus	oesophagus
33	chr15:72050600-72057200	Weak transcription	Lung	lung
34	chr15:72050600-72061000	Weak transcription	Colonic Mucosa	Colon
35	chr15:72050800-72054400	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr15:72051000-72051800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr15:72051200-72051600	Strong transcription	NHEK	skin
38	chr15:72051200-72052000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr15:72051200-72052000	Weak transcription	Fetal Muscle Leg	muscle
40	chr15:72051200-72053400	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr15:72051200-72054200	Weak transcription	Placenta	Placenta
42	chr15:72051400-72051800	Weak transcription	A549	lung
43	chr15:72051400-72052000	Weak transcription	Fetal Muscle Trunk	muscle

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