Variant report

Variant	rs16956198
Chromosome Location	chr15:72071941-72071942
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:72061256..72063166-chr15:72071067..72072827,2	MCF-7	breast:
2	chr15:72070830..72072579-chr15:72079697..72081419,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs13380217	0.98[AFR][1000 genomes]
rs16956213	0.84[YRI][hapmap]
rs28420215	0.98[AFR][1000 genomes]
rs28458348	1.00[AMR][1000 genomes]
rs28716620	1.00[AFR][1000 genomes]
rs59924069	1.00[AMR][1000 genomes]
rs7169343	1.00[AMR][1000 genomes]
rs73432473	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904334	chr15:71737376-72177659	Strong transcription Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1036938	chr15:71948106-72272855	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	esv3331306	chr15:72049818-72427559	Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	esv3433206	chr15:72049838-72427529	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72030400-72075800	Weak transcription	Right Ventricle	heart
2	chr15:72045600-72073000	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr15:72053000-72073000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr15:72054600-72072400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr15:72054600-72075000	Weak transcription	Stomach Mucosa	stomach
6	chr15:72054800-72072400	Weak transcription	Osteobl	bone
7	chr15:72054800-72081400	Weak transcription	HMEC	breast
8	chr15:72055000-72072600	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr15:72057800-72077200	Weak transcription	Gastric	stomach
10	chr15:72058000-72072600	Weak transcription	Stomach Smooth Muscle	stomach
11	chr15:72058000-72075200	Weak transcription	Aorta	Aorta
12	chr15:72058200-72075800	Weak transcription	Fetal Muscle Trunk	muscle
13	chr15:72064200-72072600	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr15:72064400-72082000	Weak transcription	Pancreas	Pancrea
15	chr15:72064600-72072800	Weak transcription	Placenta	Placenta
16	chr15:72064600-72080800	Weak transcription	Fetal Intestine Large	intestine
17	chr15:72064600-72082400	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr15:72064600-72082400	Weak transcription	NHEK	skin
19	chr15:72066000-72072800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr15:72067200-72072000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr15:72068800-72072000	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr15:72069400-72072000	Strong transcription	Fetal Stomach	stomach
23	chr15:72069400-72074000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr15:72070200-72075200	Weak transcription	Right Atrium	heart
25	chr15:72070200-72082000	Weak transcription	Esophagus	oesophagus
26	chr15:72070200-72082400	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr15:72070400-72075200	Weak transcription	Lung	lung
28	chr15:72070600-72072000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr15:72070600-72072000	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr15:72070600-72072000	Weak transcription	NHLF	lung
31	chr15:72070600-72072600	Weak transcription	Liver	Liver
32	chr15:72070800-72072400	Enhancers	A549	lung
33	chr15:72070800-72072800	Weak transcription	Fetal Muscle Leg	muscle
34	chr15:72070800-72082200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr15:72071000-72074000	Weak transcription	Left Ventricle	heart
36	chr15:72071200-72073800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr15:72071200-72080800	Weak transcription	Fetal Intestine Small	intestine
38	chr15:72071200-72081800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr15:72071400-72072600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr15:72071400-72072600	Enhancers	GM12878-XiMat	blood
41	chr15:72071600-72072000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr15:72071600-72072200	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr15:72071600-72072200	Enhancers	Fetal Heart	heart
44	chr15:72071600-72072400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr15:72071600-72072400	Weak transcription	Fetal Lung	lung
46	chr15:72071600-72072400	Enhancers	Hela-S3	cervix
47	chr15:72071600-72072800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr15:72071600-72074400	Enhancers	HSMM	muscle
49	chr15:72071600-72074600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr15:72071800-72072200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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