Variant report

Variant	rs73438476
Chromosome Location	chr15:72578083-72578084
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:72569071..72574436-chr15:72576109..72578773,6	MCF-7	breast:
2	chr15:72523217..72525097-chr15:72577058..72579494,2	K562	blood:
3	chr15:72564731..72565486-chr15:72578008..72578878,2	MCF-7	breast:
4	chr15:72562719..72568093-chr15:72577087..72580814,5	MCF-7	breast:
5	chr15:72492101..72492689-chr15:72578026..72578875,3	MCF-7	breast:
6	chr15:72577424..72579912-chr15:72581637..72583573,2	K562	blood:
7	chr15:72473291..72475888-chr15:72577722..72579583,2	K562	blood:
8	chr15:72492162..72492716-chr15:72577997..72578627,3	K562	blood:
9	chr15:72521272..72525431-chr15:72575824..72579485,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000067225	Chromatin interaction
ENSG00000137817	Chromatin interaction
ENSG00000261460	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10518987	0.92[AFR][1000 genomes]
rs12907087	0.82[AFR][1000 genomes]
rs12907377	0.82[AFR][1000 genomes]
rs12909590	0.84[AFR][1000 genomes]
rs12911285	0.82[AFR][1000 genomes]
rs12914269	0.82[AFR][1000 genomes]
rs1426169	0.82[AFR][1000 genomes]
rs34346715	0.82[AFR][1000 genomes]
rs35104697	0.82[AFR][1000 genomes]
rs35694406	0.80[AFR][1000 genomes]
rs36110969	0.82[AFR][1000 genomes]
rs57595193	0.87[AFR][1000 genomes]
rs7172504	0.85[AFR][1000 genomes]
rs73438446	0.84[AFR][1000 genomes]
rs73438458	0.85[AFR][1000 genomes]
rs73438466	0.96[AFR][1000 genomes]
rs73438493	0.88[AFR][1000 genomes]
rs8192418	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431395	chr15:72266174-72701777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv530817	chr15:72350885-72773374	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
3	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
4	nsv1601	chr15:72549885-72585176	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72566000-72582400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr15:72566000-72611400	Weak transcription	Right Ventricle	heart
3	chr15:72566200-72578400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr15:72566200-72579200	Weak transcription	Primary T cells from cord blood	blood
5	chr15:72567000-72611800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr15:72567800-72581400	Weak transcription	Fetal Muscle Leg	muscle
7	chr15:72573000-72582600	Weak transcription	Placenta	Placenta
8	chr15:72573200-72603000	Weak transcription	Fetal Intestine Large	intestine
9	chr15:72573400-72582000	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr15:72573600-72578600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr15:72573800-72578600	Weak transcription	Adipose Nuclei	Adipose
12	chr15:72573800-72595000	Weak transcription	Brain Hippocampus Middle	brain
13	chr15:72573800-72595000	Weak transcription	Brain Substantia Nigra	brain
14	chr15:72573800-72596200	Weak transcription	Liver	Liver
15	chr15:72573800-72597200	Weak transcription	Brain Anterior Caudate	brain
16	chr15:72574400-72595000	Weak transcription	Lung	lung
17	chr15:72574600-72581000	Weak transcription	Fetal Brain Female	brain
18	chr15:72575800-72582600	Strong transcription	Brain Inferior Temporal Lobe	brain
19	chr15:72576000-72578600	Weak transcription	Brain Germinal Matrix	brain
20	chr15:72576600-72578200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr15:72577000-72580800	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr15:72577600-72578800	Weak transcription	Brain Cingulate Gyrus	brain
23	chr15:72577600-72581000	Strong transcription	Brain Angular Gyrus	brain
24	chr15:72577800-72581600	Strong transcription	Fetal Intestine Small	intestine
25	chr15:72578000-72580000	Weak transcription	Fetal Stomach	stomach
26	chr15:72578000-72581000	Weak transcription	Spleen	Spleen
27	chr15:72578000-72611800	Weak transcription	Ovary	ovary

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