Variant report

Variant	rs73438493
Chromosome Location	chr15:72589649-72589650
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10518987	0.88[AFR][1000 genomes]
rs12909590	0.80[AFR][1000 genomes]
rs57595193	0.83[AFR][1000 genomes]
rs7172504	0.89[AFR][1000 genomes]
rs73438458	0.81[AFR][1000 genomes]
rs73438466	0.91[AFR][1000 genomes]
rs73438476	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431395	chr15:72266174-72701777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv530817	chr15:72350885-72773374	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
3	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72566000-72611400	Weak transcription	Right Ventricle	heart
2	chr15:72567000-72611800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr15:72573200-72603000	Weak transcription	Fetal Intestine Large	intestine
4	chr15:72573800-72595000	Weak transcription	Brain Hippocampus Middle	brain
5	chr15:72573800-72595000	Weak transcription	Brain Substantia Nigra	brain
6	chr15:72573800-72596200	Weak transcription	Liver	Liver
7	chr15:72573800-72597200	Weak transcription	Brain Anterior Caudate	brain
8	chr15:72574400-72595000	Weak transcription	Lung	lung
9	chr15:72578000-72611800	Weak transcription	Ovary	ovary
10	chr15:72579000-72598200	Weak transcription	Brain Germinal Matrix	brain
11	chr15:72579600-72602400	Weak transcription	Primary T cells from cord blood	blood
12	chr15:72580800-72595000	Weak transcription	Adipose Nuclei	Adipose
13	chr15:72580800-72598200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr15:72581000-72595200	Weak transcription	Brain Angular Gyrus	brain
15	chr15:72581200-72598600	Weak transcription	Brain Cingulate Gyrus	brain
16	chr15:72581600-72594800	Weak transcription	Fetal Intestine Small	intestine
17	chr15:72582000-72608000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr15:72582000-72611800	Weak transcription	Spleen	Spleen
19	chr15:72582600-72595000	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr15:72582600-72598600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr15:72583800-72611600	Weak transcription	Stomach Smooth Muscle	stomach
22	chr15:72585600-72598200	Weak transcription	Fetal Stomach	stomach
23	chr15:72589600-72590400	Bivalent Enhancer	HUVEC	blood vessel

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