Variant report

Variant	rs13379855
Chromosome Location	chr15:72634973-72634974
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:72634874..72635767-chr15:72808220..72808792,2	MCF-7	breast:
2	chr15:72632888..72635119-chr15:72977759..72979654,2	MCF-7	breast:
3	chr15:72605042..72606993-chr15:72631324..72635097,3	MCF-7	breast:
4	chr15:72634541..72636091-chr15:72766237..72767971,2	MCF-7	breast:
5	chr15:72633286..72635999-chr15:72640921..72642721,3	K562	blood:
6	chr15:72521137..72522908-chr15:72633930..72635737,2	MCF-7	breast:
7	chr15:72634308..72634996-chr15:73063411..73063993,2	MCF-7	breast:
8	chr15:72633335..72635089-chr15:72648050..72650924,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000140463	Chromatin interaction
ENSG00000175202	Chromatin interaction
ENSG00000166233	Chromatin interaction
ENSG00000261423	Chromatin interaction
ENSG00000067225	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10220917	1.00[ASN][1000 genomes]
rs11072372	1.00[ASN][1000 genomes]
rs12324592	1.00[ASN][1000 genomes]
rs12439127	1.00[ASN][1000 genomes]
rs12903882	1.00[ASN][1000 genomes]
rs16953788	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16956667	1.00[ASN][1000 genomes]
rs16956675	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16956759	1.00[ASN][1000 genomes]
rs16956826	1.00[ASN][1000 genomes]
rs16957154	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16957161	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1816645	1.00[ASN][1000 genomes]
rs1963894	1.00[ASN][1000 genomes]
rs28393893	1.00[ASN][1000 genomes]
rs28408413	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28422889	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28439115	1.00[ASN][1000 genomes]
rs28453701	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28471053	1.00[ASN][1000 genomes]
rs28488862	1.00[ASN][1000 genomes]
rs28493570	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28541481	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28602765	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28661594	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28795465	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28832330	1.00[ASN][1000 genomes]
rs2912208	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2912209	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2912211	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2912212	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2912213	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2959936	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2959940	0.96[AMR][1000 genomes]
rs2959942	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35293819	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4777516	1.00[ASN][1000 genomes]
rs6495002	1.00[ASN][1000 genomes]
rs73440555	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73440562	0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73440566	1.00[ASN][1000 genomes]
rs73440586	1.00[ASN][1000 genomes]
rs73442510	1.00[ASN][1000 genomes]
rs8039489	1.00[ASN][1000 genomes]
rs8192349	1.00[ASN][1000 genomes]
rs8192419	1.00[ASN][1000 genomes]
rs8192422	1.00[ASN][1000 genomes]
rs9806212	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9806258	1.00[ASN][1000 genomes]
rs9806374	1.00[ASN][1000 genomes]
rs9944261	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs998225	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431395	chr15:72266174-72701777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv530817	chr15:72350885-72773374	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
3	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72613000-72636000	Weak transcription	Right Ventricle	heart
2	chr15:72613000-72636400	Weak transcription	Gastric	stomach
3	chr15:72613000-72637000	Weak transcription	Colonic Mucosa	Colon
4	chr15:72613200-72635600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr15:72613200-72635800	Weak transcription	Pancreas	Pancrea
6	chr15:72613200-72636000	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr15:72613200-72636200	Weak transcription	HSMMtube	muscle
8	chr15:72613200-72651000	Weak transcription	Stomach Mucosa	stomach
9	chr15:72613200-72666800	Weak transcription	Fetal Heart	heart
10	chr15:72613400-72635800	Weak transcription	Duodenum Mucosa	Duodenum
11	chr15:72613400-72636600	Weak transcription	HSMM	muscle
12	chr15:72613400-72638000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr15:72613400-72667600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr15:72613800-72636400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr15:72614000-72636200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr15:72614000-72636400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr15:72614000-72642400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr15:72618800-72636800	Weak transcription	Fetal Kidney	kidney
19	chr15:72619600-72635800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr15:72619600-72636200	Weak transcription	Brain Hippocampus Middle	brain
21	chr15:72619800-72635600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr15:72619800-72636200	Weak transcription	Brain Substantia Nigra	brain
23	chr15:72619800-72637600	Weak transcription	Psoas Muscle	Psoas
24	chr15:72622200-72636800	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr15:72624200-72635800	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr15:72625400-72636800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr15:72627800-72635800	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr15:72627800-72650400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr15:72629000-72636800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr15:72629200-72649600	Strong transcription	Left Ventricle	heart
31	chr15:72629800-72649200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr15:72630000-72649200	Strong transcription	Skeletal Muscle Female	skeletal muscle
33	chr15:72630200-72636200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr15:72630200-72656200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
35	chr15:72630400-72635800	Weak transcription	Brain Anterior Caudate	brain
36	chr15:72631000-72636200	Weak transcription	Esophagus	oesophagus
37	chr15:72631000-72641400	Weak transcription	Fetal Brain Male	brain
38	chr15:72631400-72640000	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr15:72632400-72636400	Weak transcription	Rectal Smooth Muscle	rectum
40	chr15:72632400-72638000	Weak transcription	Small Intestine	intestine
41	chr15:72632400-72650000	Weak transcription	Right Atrium	heart
42	chr15:72632600-72637800	Strong transcription	Fetal Intestine Small	intestine
43	chr15:72632600-72637800	Weak transcription	NHEK	skin
44	chr15:72632600-72649600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr15:72632800-72635800	Weak transcription	Colon Smooth Muscle	Colon
46	chr15:72632800-72635800	Weak transcription	NHLF	lung
47	chr15:72632800-72635800	Weak transcription	Osteobl	bone
48	chr15:72632800-72636000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr15:72632800-72636000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr15:72632800-72636800	Weak transcription	H9 Cell Line	embryonic stem cell

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