Variant report

Variant	rs16956788
Chromosome Location	chr15:72650299-72650300
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:72637251..72641057-chr15:72647235..72650541,5	K562	blood:
2	chr15:72649583..72651262-chr15:72653562..72655522,2	MCF-7	breast:
3	chr15:72644683..72646818-chr15:72649566..72652773,3	MCF-7	breast:
4	chr15:72643627..72645538-chr15:72648082..72650902,2	K562	blood:
5	chr15:72649215..72653843-chr15:72765321..72768285,4	MCF-7	breast:
6	chr15:72648214..72651492-chr15:72765050..72767874,3	MCF-7	breast:
7	chr15:72633335..72635089-chr15:72648050..72650924,2	K562	blood:
8	chr15:72649829..72652012-chr15:72666433..72669438,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000213614	Chromatin interaction
ENSG00000166233	Chromatin interaction
ENSG00000260339	Chromatin interaction
ENSG00000260729	Chromatin interaction
ENSG00000261423	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10152810	1.00[CEU][hapmap];0.86[JPT][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10467945	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11857752	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12437909	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12440768	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12442850	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12591626	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12593434	1.00[CEU][hapmap];0.85[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12595243	1.00[CEU][hapmap];0.85[JPT][hapmap]
rs16956783	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16956884	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16956890	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16956893	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs16956917	1.00[CEU][hapmap];0.86[JPT][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16956997	1.00[CEU][hapmap];0.86[JPT][hapmap]
rs16957050	1.00[CEU][hapmap];0.86[JPT][hapmap];1.00[AFR][1000 genomes]
rs16957159	1.00[AFR][1000 genomes]
rs17841142	1.00[EUR][1000 genomes]
rs1800428	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2303448	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs35778233	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3784586	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4442765	0.82[CHB][hapmap]
rs4556749	1.00[CEU][hapmap];0.86[JPT][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4777504	1.00[CEU][hapmap];0.85[JPT][hapmap];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4777505	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4777506	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4777507	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7174287	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431395	chr15:72266174-72701777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv530817	chr15:72350885-72773374	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
3	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72613200-72651000	Weak transcription	Stomach Mucosa	stomach
2	chr15:72613200-72666800	Weak transcription	Fetal Heart	heart
3	chr15:72613400-72667600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr15:72627800-72650400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr15:72630200-72656200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
6	chr15:72633000-72650400	Strong transcription	Primary T cells fromperipheralblood	blood
7	chr15:72633000-72651200	Strong transcription	Thymus	Thymus
8	chr15:72633000-72652000	Strong transcription	Fetal Stomach	stomach
9	chr15:72633400-72651600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr15:72633600-72650400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr15:72633800-72651200	Strong transcription	Primary B cells from peripheral blood	blood
12	chr15:72634000-72650800	Strong transcription	Stomach Smooth Muscle	stomach
13	chr15:72634400-72650400	Strong transcription	Aorta	Aorta
14	chr15:72634400-72650600	Strong transcription	Fetal Muscle Trunk	muscle
15	chr15:72634600-72650600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr15:72634600-72667400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr15:72635400-72651400	Strong transcription	Primary T cells from cord blood	blood
18	chr15:72635800-72650600	Strong transcription	Primary T helper cells fromperipheralblood	blood
19	chr15:72636000-72651200	Strong transcription	GM12878-XiMat	blood
20	chr15:72636000-72651600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr15:72636400-72652000	Strong transcription	Primary B cells from cord blood	blood
22	chr15:72636800-72650400	Strong transcription	HepG2	liver
23	chr15:72639400-72652600	Strong transcription	Fetal Intestine Small	intestine
24	chr15:72640600-72667200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr15:72641800-72664800	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr15:72642000-72667000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr15:72644000-72660400	Weak transcription	Fetal Brain Male	brain
28	chr15:72645200-72651200	Strong transcription	Primary hematopoietic stem cells	blood
29	chr15:72645600-72651200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr15:72645800-72650400	Weak transcription	HMEC	breast
31	chr15:72646400-72650400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr15:72647200-72650800	Weak transcription	NH-A	brain
33	chr15:72647200-72651000	Weak transcription	HUVEC	blood vessel
34	chr15:72647600-72651000	Weak transcription	Small Intestine	intestine
35	chr15:72648000-72651000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr15:72648200-72650400	Genic enhancers	Primary monocytes fromperipheralblood	blood
37	chr15:72648400-72667600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr15:72648600-72667000	Weak transcription	Colonic Mucosa	Colon
39	chr15:72648600-72667200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr15:72648800-72650400	Enhancers	Primary neutrophils fromperipheralblood	blood
41	chr15:72648800-72667000	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr15:72649000-72650400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr15:72649000-72650800	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr15:72649000-72650800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr15:72649000-72650800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr15:72649000-72651000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
47	chr15:72649000-72651200	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr15:72649000-72651200	Weak transcription	A549	lung
49	chr15:72649000-72651800	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
50	chr15:72649000-72662200	Weak transcription	Colon Smooth Muscle	Colon

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