Variant report

Variant	rs11631312
Chromosome Location	chr15:58775296-58775297
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:58769989..58771899-chr15:58773674..58776005,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11638256	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12911658	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17190566	0.82[ASW][hapmap];1.00[CEU][hapmap];0.80[CHB][hapmap];0.91[GIH][hapmap];0.86[JPT][hapmap];0.88[MKK][hapmap];0.89[TSI][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4775048	1.00[CEU][hapmap]
rs7161799	0.91[ASN][1000 genomes]
rs7182229	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.89[TSI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs936960	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042201	chr15:58520746-58780710	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv569598	chr15:58552606-58852463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1047048	chr15:58701400-58784800	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv3362898	chr15:58705732-58850860	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv457173	chr15:58731567-58779039	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv569600	chr15:58731567-58779039	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv1043041	chr15:58744505-58876327	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv904268	chr15:58763678-58803225	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	esv3388606	chr15:58774960-58779258	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11631312	LIPC	cis	Whole Blood	GTEx

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58769000-58778600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr15:58769400-58778800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr15:58769600-58775600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr15:58769600-58775600	Weak transcription	Lung	lung
5	chr15:58769600-58780000	Weak transcription	Right Atrium	heart
6	chr15:58770000-58775400	Weak transcription	Primary T cells from cord blood	blood
7	chr15:58770000-58775400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr15:58770000-58777200	Weak transcription	K562	blood
9	chr15:58770200-58775400	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr15:58770200-58775600	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr15:58770200-58775600	Weak transcription	Fetal Lung	lung
12	chr15:58770200-58776400	Weak transcription	Right Ventricle	heart
13	chr15:58770200-58776400	Weak transcription	Spleen	Spleen
14	chr15:58770200-58776600	Weak transcription	Thymus	Thymus
15	chr15:58770400-58775400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr15:58770400-58775600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr15:58770400-58775600	Weak transcription	Fetal Thymus	thymus
18	chr15:58770400-58776400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr15:58770400-58778400	Weak transcription	Pancreas	Pancrea
20	chr15:58770400-58779800	Weak transcription	Left Ventricle	heart
21	chr15:58770600-58775400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr15:58770600-58775600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr15:58771200-58775600	Weak transcription	Dnd41	blood
24	chr15:58772400-58779800	Weak transcription	Fetal Kidney	kidney
25	chr15:58774600-58780200	Enhancers	HSMMtube	muscle
26	chr15:58774800-58775400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
27	chr15:58774800-58776200	Enhancers	Primary hematopoietic stem cells short term culture	blood
28	chr15:58774800-58777000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
29	chr15:58775000-58775800	Enhancers	Fetal Muscle Trunk	muscle
30	chr15:58775000-58777200	Enhancers	Primary T killer memory cells from peripheral blood	blood
31	chr15:58775000-58780600	Enhancers	Primary T helper cells fromperipheralblood	blood
32	chr15:58775200-58775400	Weak transcription	Fetal Muscle Leg	muscle

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