Variant report

Variant	rs11631540
Chromosome Location	chr15:59274737-59274738
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:59271260..59274887-chr15:59397313..59399336,3	K562	blood:
2	chr15:59273387..59276935-chr15:59397350..59400234,3	K562	blood:

Variant related genes	Relation type
ENSG00000157456	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10518991	0.90[CEU][hapmap]
rs10518992	0.90[CEU][hapmap]
rs11071401	0.89[CEU][hapmap]
rs11630160	0.90[CEU][hapmap]
rs11636723	0.90[CEU][hapmap]
rs11637077	0.90[CEU][hapmap]
rs11856640	0.90[CEU][hapmap]
rs11858989	0.90[CEU][hapmap]
rs12595482	0.85[CEU][hapmap]
rs12910580	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12914723	0.90[CEU][hapmap]
rs1446240	0.95[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap]
rs17302045	0.90[CEU][hapmap]
rs173214	0.90[CEU][hapmap]
rs28611776	0.83[EUR][1000 genomes]
rs28641638	0.90[CEU][hapmap]
rs34629633	0.84[EUR][1000 genomes]
rs431414	0.83[CEU][hapmap]
rs4328375	0.80[CEU][hapmap]
rs677933	0.85[CEU][hapmap]
rs8026474	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34110	chr15:58949991-59381634	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
3	esv1850946	chr15:59174539-59429160	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
4	nsv904271	chr15:59249584-59393011	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv520679	chr15:59268410-59376531	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv520872	chr15:59268410-59395184	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59265600-59279200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr15:59268600-59279000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr15:59272200-59279200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr15:59272400-59279200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr15:59272400-59279200	Weak transcription	NHEK	skin
6	chr15:59273800-59279200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr15:59274200-59274800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr15:59274200-59275200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr15:59274200-59278800	Weak transcription	Hela-S3	cervix
10	chr15:59274200-59279200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr15:59274200-59279200	Weak transcription	Adipose Nuclei	Adipose
12	chr15:59274400-59274800	Enhancers	Primary T cells fromperipheralblood	blood
13	chr15:59274400-59274800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr15:59274400-59274800	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr15:59274400-59275200	Enhancers	GM12878-XiMat	blood
16	chr15:59274400-59277600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr15:59274400-59279000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr15:59274400-59279000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr15:59274400-59279000	Weak transcription	Duodenum Mucosa	Duodenum
20	chr15:59274400-59279200	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr15:59274400-59279200	Weak transcription	Primary B cells from cord blood	blood
22	chr15:59274400-59279200	Weak transcription	Primary B cells from peripheral blood	blood
23	chr15:59274400-59279200	Weak transcription	Primary hematopoietic stem cells	blood
24	chr15:59274400-59279200	Weak transcription	Liver	Liver
25	chr15:59274400-59279200	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr15:59274400-59279200	Weak transcription	NHDF-Ad	bronchial
27	chr15:59274600-59274800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
28	chr15:59274600-59274800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
29	chr15:59274600-59275200	Enhancers	Monocytes-CD14+_RO01746	blood
30	chr15:59274600-59278800	Weak transcription	Dnd41	blood
31	chr15:59274600-59279000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr15:59274600-59279000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr15:59274600-59279200	Weak transcription	Primary T cells from cord blood	blood
34	chr15:59274600-59279200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr15:59274600-59279200	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr15:59274600-59279200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr15:59274600-59279200	Weak transcription	Fetal Thymus	thymus

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