Variant report

Variant	rs17302045
Chromosome Location	chr15:59199937-59199938
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:59171523..59173361-chr15:59197628..59200554,2	K562	blood:
2	chr15:59199885..59202097-chr15:59225544..59227395,2	K562	blood:
3	chr15:59198637..59200258-chr15:59218606..59220770,2	K562	blood:

Variant related genes	Relation type
ENSG00000137776	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10162821	0.95[ASN][1000 genomes]
rs10518991	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10518992	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1078001	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1092172	0.95[EUR][1000 genomes]
rs11071400	0.82[CEU][hapmap];0.91[CHB][hapmap];0.90[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11071401	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11630160	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11631540	0.90[CEU][hapmap]
rs11636723	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11637077	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11856640	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs11858989	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap];0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12148858	0.92[ASN][1000 genomes]
rs12438918	0.83[EUR][1000 genomes]
rs12438961	0.87[EUR][1000 genomes]
rs12440904	0.97[EUR][1000 genomes]
rs12443436	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12595482	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12708456	0.91[ASN][1000 genomes]
rs12910580	0.90[CEU][hapmap];0.82[GIH][hapmap];0.84[TSI][hapmap]
rs12914723	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12916751	0.88[ASN][1000 genomes]
rs1446240	0.85[CEU][hapmap]
rs17302038	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs173214	1.00[CEU][hapmap];0.95[CHB][hapmap];0.82[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2013117	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2270664	0.82[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2279719	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28473013	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28529423	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28538484	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28641638	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28709922	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3145	0.82[CEU][hapmap];0.91[CHB][hapmap];0.92[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs35477914	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs431414	0.94[CEU][hapmap];0.88[TSI][hapmap];0.91[EUR][1000 genomes]
rs4328375	0.90[CEU][hapmap];0.82[CHB][hapmap]
rs4774315	0.81[CHB][hapmap];0.90[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.95[ASN][1000 genomes]
rs4775101	0.82[CEU][hapmap];0.91[CHB][hapmap];0.88[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs592407	0.94[EUR][1000 genomes]
rs604057	0.95[EUR][1000 genomes]
rs637918	0.88[EUR][1000 genomes]
rs677933	0.95[CEU][hapmap];0.93[EUR][1000 genomes]
rs67851431	0.94[ASN][1000 genomes]
rs694918	0.93[EUR][1000 genomes]
rs71407077	0.94[ASN][1000 genomes]
rs7173317	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8029301	0.85[CEU][hapmap]
rs8035628	0.84[ASW][hapmap];0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs813219	0.91[EUR][1000 genomes]
rs813220	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34110	chr15:58949991-59381634	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	esv1826703	chr15:59005922-59213678	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	esv1798487	chr15:59027139-59213678	Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
5	nsv904270	chr15:59140329-59238415	Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
6	esv1850946	chr15:59174539-59429160	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59168200-59202200	Strong transcription	Fetal Thymus	thymus
2	chr15:59168400-59206600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr15:59168400-59209600	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr15:59168600-59202400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr15:59168600-59209800	Strong transcription	HUES6 Cell Line	embryonic stem cell
6	chr15:59168600-59220000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
7	chr15:59169000-59209800	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr15:59169000-59210600	Strong transcription	HUES48 Cell Line	embryonic stem cell
9	chr15:59169200-59223200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr15:59169400-59210000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
11	chr15:59169400-59211800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr15:59170000-59209400	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr15:59170200-59210000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr15:59170800-59224200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr15:59171200-59200200	Strong transcription	Placenta	Placenta
16	chr15:59179800-59224200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr15:59180800-59216400	Weak transcription	Stomach Mucosa	stomach
18	chr15:59182200-59224200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr15:59192200-59223400	Weak transcription	Right Ventricle	heart
20	chr15:59192600-59205800	Weak transcription	Colon Smooth Muscle	Colon
21	chr15:59192600-59223400	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr15:59192800-59201000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr15:59192800-59221200	Weak transcription	Small Intestine	intestine
24	chr15:59192800-59223200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr15:59192800-59224200	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr15:59193000-59200800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr15:59193000-59201600	Weak transcription	Brain Substantia Nigra	brain
28	chr15:59193000-59201800	Weak transcription	Brain Angular Gyrus	brain
29	chr15:59193000-59201800	Weak transcription	Brain Anterior Caudate	brain
30	chr15:59193000-59203800	Weak transcription	Stomach Smooth Muscle	stomach
31	chr15:59193000-59207000	Weak transcription	Brain Germinal Matrix	brain
32	chr15:59193000-59210000	Weak transcription	Ovary	ovary
33	chr15:59193000-59211200	Weak transcription	Pancreas	Pancrea
34	chr15:59193000-59217000	Weak transcription	Rectal Smooth Muscle	rectum
35	chr15:59193000-59219000	Weak transcription	Spleen	Spleen
36	chr15:59193000-59223200	Weak transcription	Aorta	Aorta
37	chr15:59193000-59223200	Weak transcription	Brain Cingulate Gyrus	brain
38	chr15:59193000-59224200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr15:59193000-59224200	Weak transcription	Colonic Mucosa	Colon
40	chr15:59193000-59224400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr15:59193200-59200000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr15:59193200-59201200	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr15:59193200-59201200	Weak transcription	Fetal Kidney	kidney
44	chr15:59193200-59204600	Weak transcription	Fetal Brain Female	brain
45	chr15:59193200-59206400	Weak transcription	HSMMtube	muscle
46	chr15:59193200-59206600	Weak transcription	Lung	lung
47	chr15:59193200-59209000	Weak transcription	Fetal Brain Male	brain
48	chr15:59193200-59210600	Weak transcription	Fetal Heart	heart
49	chr15:59193200-59211200	Weak transcription	Left Ventricle	heart
50	chr15:59193400-59204800	Weak transcription	NHLF	lung

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