Variant report

Variant	rs7173317
Chromosome Location	chr15:59173643-59173644
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:59165302..59167186-chr15:59171743..59174191,2	MCF-7	breast:
2	chr15:59171895..59174573-chr15:59176114..59178078,2	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10162821	0.94[ASN][1000 genomes]
rs10518991	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10518992	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1078001	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1092172	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11071400	0.94[ASN][1000 genomes]
rs11071401	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11630160	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11636723	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11637077	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11858989	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12148858	0.92[ASN][1000 genomes]
rs12438918	0.83[EUR][1000 genomes]
rs12438961	0.87[EUR][1000 genomes]
rs12440904	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12443436	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12595482	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12708456	0.92[ASN][1000 genomes]
rs12914723	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12916751	0.89[ASN][1000 genomes]
rs17302038	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17302045	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs173214	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2013117	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2270664	0.95[ASN][1000 genomes]
rs2279719	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28473013	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28529423	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28538484	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28641638	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28709922	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3145	0.95[ASN][1000 genomes]
rs35477914	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs431414	0.91[EUR][1000 genomes]
rs4774315	0.94[ASN][1000 genomes]
rs4775101	0.89[ASN][1000 genomes]
rs592407	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs604057	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs637918	0.88[EUR][1000 genomes]
rs677933	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs67851431	0.95[ASN][1000 genomes]
rs694918	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71407077	0.95[ASN][1000 genomes]
rs8035628	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs813219	0.91[EUR][1000 genomes]
rs813220	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34110	chr15:58949991-59381634	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	esv1826703	chr15:59005922-59213678	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	esv1798487	chr15:59027139-59213678	Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
5	nsv1035640	chr15:59105360-59190930	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	nsv904270	chr15:59140329-59238415	Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
7	nsv94675	chr15:59164881-59174380	Strong transcription Weak transcription Genic enhancers Enhancers	Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59147600-59174600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr15:59158200-59174600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr15:59166800-59179400	Weak transcription	Fetal Heart	heart
4	chr15:59167000-59193200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr15:59167600-59176000	Strong transcription	HSMM	muscle
6	chr15:59167800-59187600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr15:59167800-59194000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr15:59168000-59175400	Weak transcription	Small Intestine	intestine
9	chr15:59168000-59182000	Strong transcription	Thymus	Thymus
10	chr15:59168000-59188800	Strong transcription	Fetal Muscle Leg	muscle
11	chr15:59168200-59189000	Strong transcription	Fetal Muscle Trunk	muscle
12	chr15:59168200-59202200	Strong transcription	Fetal Thymus	thymus
13	chr15:59168400-59181800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
14	chr15:59168400-59182600	Strong transcription	NHLF	lung
15	chr15:59168400-59188400	Strong transcription	Stomach Smooth Muscle	stomach
16	chr15:59168400-59188800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr15:59168400-59193200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr15:59168400-59193200	Strong transcription	Duodenum Smooth Muscle	Duodenum
19	chr15:59168400-59206600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr15:59168400-59209600	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr15:59168600-59176200	Strong transcription	Primary neutrophils fromperipheralblood	blood
22	chr15:59168600-59178000	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr15:59168600-59188600	Strong transcription	Skeletal Muscle Male	skeletal muscle
24	chr15:59168600-59189400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr15:59168600-59193000	Strong transcription	A549	lung
26	chr15:59168600-59195800	Strong transcription	Dnd41	blood
27	chr15:59168600-59202400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr15:59168600-59209800	Strong transcription	HUES6 Cell Line	embryonic stem cell
29	chr15:59168600-59220000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
30	chr15:59168800-59176000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr15:59168800-59177400	Strong transcription	HSMMtube	muscle
32	chr15:59168800-59180400	Weak transcription	Stomach Mucosa	stomach
33	chr15:59168800-59190200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr15:59168800-59193200	Strong transcription	Muscle Satellite Cultured Cells	--
35	chr15:59168800-59193200	Strong transcription	Adipose Nuclei	Adipose
36	chr15:59169000-59179800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr15:59169000-59190400	Strong transcription	Cortex derived primary cultured neurospheres	brain
38	chr15:59169000-59193000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr15:59169000-59193200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr15:59169000-59193400	Strong transcription	K562	blood
41	chr15:59169000-59209800	Strong transcription	HUES64 Cell Line	embryonic stem cell
42	chr15:59169000-59210600	Strong transcription	HUES48 Cell Line	embryonic stem cell
43	chr15:59169200-59182600	Strong transcription	iPS-15b Cell Line	embryonic stem cell
44	chr15:59169200-59193200	Strong transcription	H1 Cell Line	embryonic stem cell
45	chr15:59169200-59193800	Strong transcription	NHDF-Ad	bronchial
46	chr15:59169200-59195000	Strong transcription	Duodenum Mucosa	Duodenum
47	chr15:59169200-59223200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr15:59169400-59178000	Strong transcription	NHEK	skin
49	chr15:59169400-59182800	Strong transcription	Fetal Stomach	stomach
50	chr15:59169400-59187000	Strong transcription	Brain Germinal Matrix	brain

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