Variant report

Variant	rs12443436
Chromosome Location	chr15:59231221-59231222
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:59224602..59226839-chr15:59230872..59233457,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137776	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10162821	0.80[ASN][1000 genomes]
rs10518991	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10518992	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1078001	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1092172	0.87[EUR][1000 genomes]
rs11071400	0.80[ASN][1000 genomes]
rs11071401	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11630160	0.80[AFR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11636723	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11637077	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11858989	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12438918	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12438961	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12440904	0.89[EUR][1000 genomes]
rs12595482	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12708456	0.84[ASN][1000 genomes]
rs12909894	0.90[ASN][1000 genomes]
rs12914723	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12916751	0.87[ASN][1000 genomes]
rs17302038	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17302045	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs173214	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2013117	0.83[EUR][1000 genomes]
rs2270664	0.81[ASN][1000 genomes]
rs2279719	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28473013	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28529423	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28538484	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28611776	0.88[AMR][1000 genomes]
rs28641638	0.80[AFR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28709922	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3145	0.81[ASN][1000 genomes]
rs34629633	0.88[AMR][1000 genomes]
rs35477914	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs431414	0.83[EUR][1000 genomes]
rs4328375	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4774315	0.80[ASN][1000 genomes]
rs4775101	0.87[ASN][1000 genomes]
rs592407	0.86[EUR][1000 genomes]
rs604057	0.88[EUR][1000 genomes]
rs637918	0.81[EUR][1000 genomes]
rs677933	0.86[EUR][1000 genomes]
rs67851431	0.81[ASN][1000 genomes]
rs694918	0.86[EUR][1000 genomes]
rs71407077	0.81[ASN][1000 genomes]
rs7173317	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8026474	0.88[AMR][1000 genomes]
rs8035628	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs813219	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34110	chr15:58949991-59381634	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
3	nsv904270	chr15:59140329-59238415	Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
4	esv1850946	chr15:59174539-59429160	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59226600-59244400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr15:59227000-59232600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr15:59227000-59234000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr15:59227200-59231400	Weak transcription	Fetal Thymus	thymus

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