Variant report

Variant	rs11632130
Chromosome Location	chr15:45928702-45928703
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:45736069..45742318-chr15:45926037..45929619,6	MCF-7	breast:
2	chr15:45927181..45929961-chr15:45939240..45941307,2	MCF-7	breast:
3	chr15:45692929..45695674-chr15:45926950..45929580,2	MCF-7	breast:
4	chr15:45877908..45881944-chr15:45926466..45928753,3	MCF-7	breast:
5	chr15:45927063..45929876-chr15:45998234..45999862,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000171763	Chromatin interaction
ENSG00000259354	Chromatin interaction
ENSG00000104164	Chromatin interaction
ENSG00000252285	Chromatin interaction
ENSG00000171766	Chromatin interaction
ENSG00000260170	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11070461	0.81[AMR][1000 genomes]
rs11633216	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12442114	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1967502	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2899382	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34311210	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs353106	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3985921	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3985922	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs594516	0.95[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs625466	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6493165	0.86[AMR][1000 genomes]
rs8026123	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8026175	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8040662	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8040706	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904188	chr15:45801035-45941689	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv904189	chr15:45821158-46298458	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv904190	chr15:45892672-45960897	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	27 gene(s)	inside rSNPs	n/a
4	nsv904191	chr15:45902779-46381874	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:45926600-45928800	Active TSS	Small Intestine	intestine
2	chr15:45926600-45929200	Active TSS	Colonic Mucosa	Colon
3	chr15:45926600-45929200	Active TSS	Psoas Muscle	Psoas
4	chr15:45926800-45928800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr15:45926800-45928800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr15:45926800-45928800	Active TSS	Liver	Liver
7	chr15:45926800-45928800	Active TSS	Duodenum Mucosa	Duodenum
8	chr15:45926800-45928800	Active TSS	Rectal Mucosa Donor 31	rectum
9	chr15:45926800-45929000	Active TSS	Colon Smooth Muscle	Colon
10	chr15:45926800-45929200	Active TSS	Rectal Mucosa Donor 29	rectum
11	chr15:45927000-45928800	Active TSS	GM12878-XiMat	blood
12	chr15:45927000-45928800	Active TSS	HMEC	breast
13	chr15:45927000-45928800	Active TSS	NHDF-Ad	bronchial
14	chr15:45927000-45929000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr15:45927200-45928800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr15:45927400-45931000	Flanking Active TSS	Primary B cells from cord blood	blood
17	chr15:45927600-45929200	Weak transcription	K562	blood
18	chr15:45927600-45930400	Enhancers	Fetal Heart	heart
19	chr15:45927800-45931800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
20	chr15:45927800-45935400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
21	chr15:45928000-45929200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr15:45928000-45929600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr15:45928200-45928800	Weak transcription	Gastric	stomach
24	chr15:45928200-45929200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr15:45928200-45929200	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr15:45928200-45929200	Weak transcription	Placenta	Placenta
27	chr15:45928200-45929200	Weak transcription	Right Ventricle	heart
28	chr15:45928200-45929400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr15:45928200-45929400	Weak transcription	HSMM	muscle
30	chr15:45928200-45929400	Weak transcription	HSMMtube	muscle
31	chr15:45928200-45929600	Enhancers	Primary B cells from peripheral blood	blood
32	chr15:45928200-45929600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr15:45928200-45929600	Enhancers	Cortex derived primary cultured neurospheres	brain
34	chr15:45928200-45929600	Enhancers	Fetal Thymus	thymus
35	chr15:45928200-45929800	Weak transcription	NH-A	brain
36	chr15:45928200-45930000	Enhancers	Left Ventricle	heart
37	chr15:45928200-45931000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr15:45928200-45934200	Weak transcription	Ovary	ovary
39	chr15:45928400-45928800	Active TSS	Primary T regulatory cells fromperipheralblood	blood
40	chr15:45928400-45928800	Enhancers	Skeletal Muscle Female	skeletal muscle
41	chr15:45928400-45929000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
42	chr15:45928400-45929000	Weak transcription	Brain Anterior Caudate	brain
43	chr15:45928400-45929000	Weak transcription	Brain Substantia Nigra	brain
44	chr15:45928400-45929000	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr15:45928400-45929000	Weak transcription	Stomach Mucosa	stomach
46	chr15:45928400-45929000	Active TSS	Stomach Smooth Muscle	stomach
47	chr15:45928400-45929200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr15:45928400-45929200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr15:45928400-45929200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
50	chr15:45928400-45929200	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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