Variant report

Variant	rs11632492
Chromosome Location	chr15:58990535-58990536
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11631334	0.90[AMR][1000 genomes]
rs11639208	0.90[AMR][1000 genomes]
rs17190720	0.90[AMR][1000 genomes]
rs2555787	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2657126	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs347118	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs347119	0.91[AMR][1000 genomes]
rs347121	0.91[AMR][1000 genomes]
rs347122	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs384322	0.83[AMR][1000 genomes]
rs387005	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs390390	0.91[AMR][1000 genomes]
rs415403	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs424346	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs437549	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs602921	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs625510	0.91[AMR][1000 genomes]
rs73426525	0.81[EUR][1000 genomes]
rs73426541	0.92[EUR][1000 genomes]
rs793417	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv904269	chr15:58906145-58992591	Enhancers Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv34110	chr15:58949991-59381634	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58936200-58991400	Weak transcription	HMEC	breast
2	chr15:58974600-58991000	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr15:58977200-58996400	Weak transcription	NHLF	lung
4	chr15:58977200-58998200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr15:58977200-59004400	Weak transcription	Ovary	ovary
6	chr15:58977200-59007800	Weak transcription	HepG2	liver
7	chr15:58977200-59039200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr15:58982400-58991400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr15:58982400-59005000	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr15:58982600-59008000	Weak transcription	Fetal Brain Male	brain
11	chr15:58983200-59016600	Weak transcription	Small Intestine	intestine
12	chr15:58983800-58991600	Weak transcription	Esophagus	oesophagus
13	chr15:58983800-58991800	Weak transcription	Aorta	Aorta
14	chr15:58985000-58991400	Weak transcription	Liver	Liver
15	chr15:58985200-58991200	Weak transcription	Duodenum Mucosa	Duodenum
16	chr15:58985200-59005000	Weak transcription	HSMMtube	muscle
17	chr15:58985400-58990800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr15:58985400-58990800	Weak transcription	Primary B cells from cord blood	blood
19	chr15:58985400-58992200	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr15:58985400-58993400	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr15:58985600-58991200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr15:58985600-58991200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr15:58985600-58995600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr15:58986600-59016600	Weak transcription	Stomach Smooth Muscle	stomach
25	chr15:58986800-58992800	Weak transcription	Osteobl	bone
26	chr15:58987400-58991800	Weak transcription	NHEK	skin
27	chr15:58987400-58993600	Weak transcription	Brain Angular Gyrus	brain
28	chr15:58987400-59012000	Weak transcription	Rectal Smooth Muscle	rectum
29	chr15:58987600-58990600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr15:58987600-58991000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr15:58987600-58991200	Weak transcription	Brain Hippocampus Middle	brain
32	chr15:58987600-58991200	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr15:58987600-58995800	Weak transcription	Hela-S3	cervix
34	chr15:58987600-59005000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr15:58987600-59007800	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr15:58987800-58991400	Weak transcription	Fetal Kidney	kidney
37	chr15:58988200-58991000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr15:58988600-58990800	ZNF genes & repeats	Fetal Intestine Small	intestine
39	chr15:58988600-58991600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr15:58988800-58990800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
41	chr15:58989000-58991600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
42	chr15:58989000-58992000	Genic enhancers	Fetal Thymus	thymus
43	chr15:58989000-58992400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
44	chr15:58989000-58997200	ZNF genes & repeats	GM12878-XiMat	blood
45	chr15:58989200-58990600	Enhancers	Primary T helper naive cells from peripheral blood	blood
46	chr15:58989200-58990800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr15:58989400-58996000	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr15:58989600-58992000	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr15:58989600-58993200	ZNF genes & repeats	Fetal Intestine Large	intestine
50	chr15:58989800-58992800	ZNF genes & repeats	A549	lung

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