Variant report

Variant	rs347121
Chromosome Location	chr15:59059056-59059057
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr15:59059009-59059501	A549	lung:	n/a	chr15:59059252-59059263
2	CEBPB	chr15:59059044-59059375	ECC-1	luminal epithelium:	n/a	chr15:59059252-59059263
3	CEBPB	chr15:59059035-59059490	K562	blood:	n/a	chr15:59059252-59059263
4	CEBPB	chr15:59059028-59059500	ECC-1	luminal epithelium:	n/a	chr15:59059252-59059263
5	CEBPB	chr15:59059047-59059409	K562	blood:	n/a	chr15:59059252-59059263
6	CEBPB	chr15:59058848-59059536	A549	lung:	n/a	chr15:59059252-59059263
7	CEBPB	chr15:59059004-59059523	MCF-7	breast:	n/a	chr15:59059252-59059263

No.	Distal block	Cell Line	Cell type
1	chr15:59057970..59061126-chr15:59061788..59064643,4	K562	blood:
2	chr15:59053661..59056095-chr15:59058009..59059770,2	MCF-7	breast:
3	chr15:59020037..59022802-chr15:59058801..59061672,2	K562	blood:
4	chr15:59048564..59050956-chr15:59058721..59061333,2	K562	blood:

Variant related genes	Relation type
FAM63B	TF binding region
ENSG00000245975	Chromatin interaction
ENSG00000128923	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11631244	0.88[EUR][1000 genomes]
rs11631334	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11632492	0.91[AMR][1000 genomes]
rs11639208	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16940810	0.88[EUR][1000 genomes]
rs17190720	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2555787	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2657126	1.00[AMR][1000 genomes]
rs347118	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs347119	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs347122	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs384322	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs387005	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs390390	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs415403	1.00[AMR][1000 genomes]
rs424346	1.00[AMR][1000 genomes]
rs437549	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs602921	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs625510	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs664783	0.94[EUR][1000 genomes]
rs73426525	0.82[AMR][1000 genomes]
rs73426541	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs793417	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	esv34110	chr15:58949991-59381634	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	esv1843037	chr15:59005922-59115159	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
5	esv1826703	chr15:59005922-59213678	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
6	esv1798487	chr15:59027139-59213678	Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
7	nsv428638	chr15:59032300-59126567	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59042600-59062600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:59043000-59062400	Weak transcription	Psoas Muscle	Psoas
3	chr15:59057000-59062600	Weak transcription	Dnd41	blood
4	chr15:59058800-59062600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr15:59059000-59062400	Weak transcription	Sigmoid Colon	Sigmoid Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links