Variant report

Variant	rs11634176
Chromosome Location	chr15:45316342-45316343
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11629478	1.00[JPT][hapmap]
rs11629994	0.85[EUR][1000 genomes]
rs11632215	1.00[JPT][hapmap]
rs11632296	0.93[EUR][1000 genomes]
rs11634010	1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11634299	1.00[EUR][1000 genomes]
rs11634531	1.00[EUR][1000 genomes]
rs11634544	1.00[EUR][1000 genomes]
rs11634612	1.00[EUR][1000 genomes]
rs11635511	1.00[JPT][hapmap]
rs11635535	0.93[EUR][1000 genomes]
rs11636744	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11636774	1.00[JPT][hapmap]
rs11638723	1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs3858891	1.00[JPT][hapmap]
rs4775139	1.00[JPT][hapmap]
rs4775672	1.00[EUR][1000 genomes]
rs4775713	1.00[EUR][1000 genomes]
rs4775723	1.00[EUR][1000 genomes]
rs4775724	1.00[EUR][1000 genomes]
rs56827440	0.93[EUR][1000 genomes]
rs57158125	0.82[EUR][1000 genomes]
rs58332018	1.00[EUR][1000 genomes]
rs7403755	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758380	chr15:44968868-45422842	Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	95 gene(s)	inside rSNPs	diseases
2	esv2760029	chr15:44968868-45422842	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	95 gene(s)	inside rSNPs	diseases
3	nsv916374	chr15:45058112-45769052	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
4	esv2757599	chr15:45100852-45383620	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	nsv1048317	chr15:45152371-45326205	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
6	nsv977710	chr15:45316191-45360995	Strong transcription Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:45314600-45316400	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr15:45314600-45316400	Flanking Active TSS	Primary B cells from cord blood	blood
3	chr15:45314600-45316400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr15:45314600-45316800	Flanking Active TSS	Dnd41	blood
5	chr15:45314800-45316400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr15:45314800-45316600	Active TSS	A549	lung
7	chr15:45315400-45316400	Transcr. at gene 5' and 3'	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr15:45315400-45316400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
9	chr15:45315400-45316400	Flanking Active TSS	Adipose Nuclei	Adipose
10	chr15:45315400-45316400	Flanking Active TSS	Colonic Mucosa	Colon
11	chr15:45315400-45316400	Flanking Active TSS	Gastric	stomach
12	chr15:45315400-45316400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
13	chr15:45315400-45316400	Flanking Active TSS	HUVEC	blood vessel
14	chr15:45315400-45316600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
15	chr15:45315400-45316600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr15:45315400-45316600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr15:45315400-45316600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr15:45315400-45316600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr15:45315400-45316600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
20	chr15:45315400-45316600	Flanking Active TSS	HMEC	breast
21	chr15:45315600-45316400	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr15:45315600-45316400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr15:45315600-45316400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr15:45315600-45316400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
25	chr15:45315600-45316400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
26	chr15:45315600-45316400	Flanking Active TSS	Fetal Intestine Small	intestine
27	chr15:45315600-45316400	Flanking Active TSS	Fetal Stomach	stomach
28	chr15:45315600-45316400	Flanking Active TSS	Fetal Thymus	thymus
29	chr15:45315600-45316400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
30	chr15:45315600-45316400	Flanking Active TSS	NH-A	brain
31	chr15:45315600-45316600	Flanking Active TSS	H1 Cell Line	embryonic stem cell
32	chr15:45315600-45316600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr15:45315600-45316600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
34	chr15:45315600-45316600	Flanking Active TSS	Duodenum Mucosa	Duodenum
35	chr15:45315600-45316600	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
36	chr15:45315600-45316600	Flanking Active TSS	Fetal Brain Female	brain
37	chr15:45315600-45316600	Flanking Active TSS	GM12878-XiMat	blood
38	chr15:45315600-45316600	Flanking Active TSS	Osteobl	bone
39	chr15:45315800-45316400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
40	chr15:45315800-45316400	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
41	chr15:45315800-45316400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
42	chr15:45315800-45316400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr15:45315800-45316400	Flanking Active TSS	Colon Smooth Muscle	Colon
44	chr15:45315800-45316400	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
45	chr15:45315800-45316400	Flanking Active TSS	Fetal Heart	heart
46	chr15:45315800-45316400	Enhancers	Lung	lung
47	chr15:45315800-45316400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
48	chr15:45315800-45316400	Flanking Active TSS	Rectal Smooth Muscle	rectum
49	chr15:45315800-45316400	Active TSS	Right Atrium	heart
50	chr15:45315800-45316400	Flanking Active TSS	Thymus	Thymus

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