Variant report

Variant	rs56827440
Chromosome Location	chr15:45317050-45317051
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11632296	0.87[EUR][1000 genomes]
rs11634010	0.93[EUR][1000 genomes]
rs11634176	0.93[EUR][1000 genomes]
rs11634299	0.93[EUR][1000 genomes]
rs11634531	0.93[EUR][1000 genomes]
rs11634544	0.93[EUR][1000 genomes]
rs11634612	0.93[EUR][1000 genomes]
rs11635535	0.86[EUR][1000 genomes]
rs11636744	0.93[EUR][1000 genomes]
rs11636774	0.83[EUR][1000 genomes]
rs11638723	0.86[EUR][1000 genomes]
rs4775672	0.93[EUR][1000 genomes]
rs4775713	0.93[EUR][1000 genomes]
rs4775723	0.93[EUR][1000 genomes]
rs4775724	0.93[EUR][1000 genomes]
rs58332018	0.93[EUR][1000 genomes]
rs7403755	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758380	chr15:44968868-45422842	Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	95 gene(s)	inside rSNPs	diseases
2	esv2760029	chr15:44968868-45422842	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	95 gene(s)	inside rSNPs	diseases
3	nsv916374	chr15:45058112-45769052	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
4	esv2757599	chr15:45100852-45383620	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	nsv1048317	chr15:45152371-45326205	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
6	nsv977710	chr15:45316191-45360995	Strong transcription Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:45316000-45321600	Weak transcription	Aorta	Aorta
2	chr15:45316200-45317200	Enhancers	Primary hematopoietic stem cells	blood
3	chr15:45316200-45326200	Weak transcription	Psoas Muscle	Psoas
4	chr15:45316200-45340600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr15:45316400-45317200	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr15:45316400-45317200	Enhancers	Fetal Brain Male	brain
7	chr15:45316400-45317200	Enhancers	Gastric	stomach
8	chr15:45316400-45317200	Weak transcription	Small Intestine	intestine
9	chr15:45316400-45317400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr15:45316400-45318000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr15:45316400-45318400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr15:45316400-45319200	Enhancers	Fetal Thymus	thymus
13	chr15:45316400-45320600	Weak transcription	Fetal Kidney	kidney
14	chr15:45316400-45321000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr15:45316400-45321400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr15:45316400-45321400	Weak transcription	Primary T cells from cord blood	blood
17	chr15:45316400-45321600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr15:45316400-45321600	Weak transcription	Right Atrium	heart
19	chr15:45316400-45321800	Weak transcription	Ovary	ovary
20	chr15:45316400-45323400	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr15:45316400-45327600	Weak transcription	Primary B cells from cord blood	blood
22	chr15:45316400-45329400	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr15:45316400-45333000	Weak transcription	Lung	lung
24	chr15:45316400-45341200	Weak transcription	Fetal Muscle Trunk	muscle
25	chr15:45316400-45342200	Weak transcription	HSMMtube	muscle
26	chr15:45316400-45342600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr15:45316600-45317200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr15:45316600-45317200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr15:45316600-45317200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr15:45316600-45317400	Enhancers	Fetal Brain Female	brain
31	chr15:45316600-45317600	Enhancers	iPS-18 Cell Line	embryonic stem cell
32	chr15:45316600-45317600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr15:45316600-45317600	Enhancers	Brain Hippocampus Middle	brain
34	chr15:45316600-45317600	Enhancers	Stomach Mucosa	stomach
35	chr15:45316600-45317800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr15:45316600-45317800	Enhancers	Brain Cingulate Gyrus	brain
37	chr15:45316600-45318000	Enhancers	Brain Substantia Nigra	brain
38	chr15:45316600-45318200	Weak transcription	HUVEC	blood vessel
39	chr15:45316600-45318600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr15:45316600-45318600	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr15:45316600-45318600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr15:45316600-45318800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr15:45316600-45318800	Weak transcription	A549	lung
44	chr15:45316600-45319000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr15:45316600-45319000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr15:45316600-45319000	Weak transcription	Duodenum Mucosa	Duodenum
47	chr15:45316600-45319000	Weak transcription	Left Ventricle	heart
48	chr15:45316600-45319000	Weak transcription	Right Ventricle	heart
49	chr15:45316600-45319400	Weak transcription	Brain Angular Gyrus	brain
50	chr15:45316600-45319400	Weak transcription	Brain Germinal Matrix	brain

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