Variant report

Variant	rs11634460
Chromosome Location	chr15:41121335-41121336
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:4)
CpG islands
(count:61)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:4 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	YY1	chr15:41121278-41121652	K562	blood:	n/a	chr15:41121574-41121583
2	USF1	chr15:41121328-41121722	K562	blood:	n/a	chr15:41121586-41121597
3	NR2F2	chr15:41120873-41121341	MCF-7	breast:	n/a	chr15:41121126-41121141
4	YY1	chr15:41121326-41121671	GM12878	blood:	n/a	chr15:41121574-41121583

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:41121320-41121370	AoSMC	blood vessel:	n/a
2	chr15:41121320-41121370	HCPEpiC	choroid plexus:	n/a
3	chr15:41121320-41121370	LNCaP	prostate:	n/a
4	chr15:41121320-41121370	SAEC	small airway:	n/a
5	chr15:41121320-41121370	SK-N-MC	brain:	n/a
6	chr15:41121320-41121370	AG09319	gingival:	n/a
7	chr15:41121320-41121370	CMK	blood:	n/a
8	chr15:41121320-41121370	ovcar-3	ovarian:	n/a
9	chr15:41121320-41121370	T-47D	breast:	n/a
10	chr15:41121320-41121370	HepG2	liver:	n/a
11	chr15:41121320-41121370	HAEpiC	amniotic membrane:	n/a
12	chr15:41121320-41121370	PANC-1	pancreas:	n/a
13	chr15:41121320-41121370	AG04450	lung:	fetal
14	chr15:41121320-41121370	SK-N-SH	brain:	n/a
15	chr15:41121320-41121370	BE2_C	brain:	n/a
16	chr15:41121320-41121370	PFSK-1	brain:	n/a
17	chr15:41121320-41121370	GM12878	blood:	n/a
18	chr15:41121320-41121370	HEEpiC	esophagus:	n/a
19	chr15:41121320-41121370	GM06990	blood:	n/a
20	chr15:41121320-41121370	HCM	heart:	n/a
21	chr15:41121320-41121370	PrEC	prostate:	n/a
22	chr15:41121320-41121370	GM19239	blood:	n/a
23	chr15:41121320-41121370	SK-N-SH_RA	brain:	n/a
24	chr15:41121320-41121370	GM12892	blood:	n/a
25	chr15:41121320-41121370	NHDF-neo	bronchial:	n/a
26	chr15:41121320-41121370	HCF	heart:	n/a
27	chr15:41121320-41121370	HNPCEpiC	eye:	n/a
28	chr15:41121320-41121370	Jurkat	blood:	n/a
29	chr15:41121320-41121370	HUVEC	blood vessel:	n/a
30	chr15:41121320-41121370	AG10803	skin:	n/a
31	chr15:41121320-41121370	HIPEpiC	eye:	n/a
32	chr15:41121320-41121370	MCF-7	breast:	n/a
33	chr15:41121320-41121370	HMEC	breast:	n/a
34	chr15:41121320-41121370	Hepatocyte	liver:	n/a
35	chr15:41121320-41121370	ProgFib	skin:	n/a
36	chr15:41121320-41121370	HL-60	blood:	n/a
37	chr15:41121320-41121370	Caco-2	colon:	n/a
38	chr15:41121320-41121370	NB4	blood:	n/a
39	chr15:41121320-41121370	AG04449	skin:	fetal
40	chr15:41121320-41121370	A549	lung:	n/a
41	chr15:41121320-41121370	U87	brain:	n/a
42	chr15:41121320-41121370	H1-hESC	embryonic stem cell:	embryo
43	chr15:41121320-41121370	HRCEpiC	kidney:	n/a
44	chr15:41121320-41121370	K562	blood:	n/a
45	chr15:41121320-41121370	NT2-D1	testis:	n/a
46	chr15:41121320-41121370	HPAEpiC	pulmonary alveolar:	n/a
47	chr15:41121320-41121370	IMR90	lung:	fetal
48	chr15:41121320-41121370	NHBE	bronchial:	n/a
49	chr15:41121320-41121370	HEK293	kidney:	embryo
50	chr15:41121320-41121370	HRPEpiC	eye:	n/a

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:41120065..41123435-chr15:41135561..41137302,3	MCF-7	breast:

No data

Variant related genes	Relation type
PPP1R14D	TF binding region
PPP1R14D	CpG island
ENSG00000261183	Chromatin interaction
ENSG00000166145	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7165020	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904101	chr15:40979651-41275014	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	esv1819092	chr15:41017682-41255750	Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
3	nsv904102	chr15:41046883-41201699	Strong transcription Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv1054764	chr15:41068625-41196410	Active TSS Strong transcription Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv569228	chr15:41106485-41194151	Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41107200-41135200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr15:41107600-41135200	Weak transcription	Esophagus	oesophagus
3	chr15:41108200-41135600	Weak transcription	Spleen	Spleen
4	chr15:41112000-41135800	Weak transcription	Right Atrium	heart
5	chr15:41117600-41121600	Active TSS	Rectal Smooth Muscle	rectum
6	chr15:41118600-41124200	Weak transcription	Pancreas	Pancrea
7	chr15:41119200-41126800	Weak transcription	Hela-S3	cervix
8	chr15:41119400-41121600	Active TSS	Duodenum Mucosa	Duodenum
9	chr15:41120200-41121800	Flanking Active TSS	Fetal Intestine Large	intestine
10	chr15:41120400-41121600	Flanking Active TSS	Fetal Intestine Small	intestine
11	chr15:41120400-41121600	Flanking Active TSS	HepG2	liver
12	chr15:41120400-41124800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
13	chr15:41120800-41121400	Enhancers	A549	lung
14	chr15:41120800-41121600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr15:41120800-41122000	Enhancers	K562	blood
16	chr15:41120800-41135600	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr15:41121000-41121600	Enhancers	Gastric	stomach
18	chr15:41121000-41121800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
19	chr15:41121000-41123600	Enhancers	Placenta	Placenta
20	chr15:41121200-41121400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
21	chr15:41121200-41121400	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr15:41121200-41121400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr15:41121200-41121400	Flanking Active TSS	Colonic Mucosa	Colon
24	chr15:41121200-41121600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
25	chr15:41121200-41121600	Flanking Active TSS	Stomach Mucosa	stomach
26	chr15:41121200-41123000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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