Variant report

Variant	rs7165020
Chromosome Location	chr15:41295015-41295016
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:41221454..41223191-chr15:41293221..41295361,2	MCF-7	breast:
2	chr15:41291439..41293905-chr15:41294966..41297469,2	K562	blood:
3	chr15:41231280..41234394-chr15:41292861..41295820,3	K562	blood:
4	chr15:41220148..41223426-chr15:41291682..41295350,3	K562	blood:

Variant related genes	Relation type
ENSG00000128917	Chromatin interaction
ENSG00000259617	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10518712	1.00[YRI][hapmap]
rs11070319	1.00[GIH][hapmap];1.00[EUR][1000 genomes]
rs11634460	1.00[CEU][hapmap]
rs13380088	1.00[AMR][1000 genomes]
rs16971263	1.00[GIH][hapmap];1.00[EUR][1000 genomes]
rs16971413	1.00[ASW][hapmap];1.00[GIH][hapmap];0.94[LWK][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16971500	1.00[YRI][hapmap]
rs2412599	0.82[ASW][hapmap];0.83[YRI][hapmap]
rs2412600	0.82[ASW][hapmap];0.83[YRI][hapmap]
rs3101435	1.00[EUR][1000 genomes]
rs474351	1.00[GIH][hapmap]
rs496499	1.00[GIH][hapmap]
rs57802780	1.00[AMR][1000 genomes]
rs57859748	0.90[AMR][1000 genomes]
rs58064468	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58367898	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58653174	1.00[AMR][1000 genomes]
rs59935357	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60036819	0.80[AMR][1000 genomes]
rs60866613	0.91[AMR][1000 genomes]
rs6492975	0.98[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7162394	0.92[YRI][hapmap];0.91[AMR][1000 genomes]
rs7170945	1.00[AMR][1000 genomes]
rs7174426	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7178308	1.00[GIH][hapmap]
rs73385890	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73385892	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73399681	0.80[AMR][1000 genomes]
rs73399694	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73401689	0.81[AFR][1000 genomes]
rs73401695	0.81[AFR][1000 genomes]
rs73401698	0.81[AFR][1000 genomes]
rs8031345	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8034461	1.00[EUR][1000 genomes]
rs8040425	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053462	chr15:41270067-41396094	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41258800-41348400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:41266800-41298400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr15:41267600-41301200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr15:41267800-41301400	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr15:41268000-41298000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:41268000-41302400	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr15:41276200-41296000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr15:41276600-41354600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr15:41276800-41305200	Weak transcription	Fetal Brain Male	brain
10	chr15:41279800-41298200	Weak transcription	Fetal Heart	heart
11	chr15:41280200-41306600	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr15:41280400-41339800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr15:41282400-41295200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr15:41284400-41301600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr15:41285800-41298600	Strong transcription	Dnd41	blood
16	chr15:41286000-41298000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr15:41286000-41298200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr15:41286000-41299000	Strong transcription	Primary B cells from cord blood	blood
19	chr15:41286400-41298000	Strong transcription	Fetal Stomach	stomach
20	chr15:41287200-41301000	Strong transcription	HUES64 Cell Line	embryonic stem cell
21	chr15:41288200-41307400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr15:41288200-41309800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr15:41288400-41296000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr15:41288400-41296000	Weak transcription	K562	blood
25	chr15:41289000-41296000	Weak transcription	Right Ventricle	heart
26	chr15:41289000-41300200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr15:41289000-41300600	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr15:41289200-41306800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr15:41289400-41307000	Weak transcription	Colonic Mucosa	Colon
30	chr15:41289600-41295800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr15:41289600-41299800	Weak transcription	Brain Substantia Nigra	brain
32	chr15:41289800-41296000	Weak transcription	Brain Cingulate Gyrus	brain
33	chr15:41289800-41296000	Weak transcription	Colon Smooth Muscle	Colon
34	chr15:41289800-41296600	Weak transcription	Spleen	Spleen
35	chr15:41289800-41307800	Weak transcription	Rectal Smooth Muscle	rectum
36	chr15:41289800-41310600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr15:41290000-41296000	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr15:41290000-41296200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr15:41290000-41296600	Weak transcription	Brain Germinal Matrix	brain
40	chr15:41290000-41308200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr15:41290200-41310600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr15:41291400-41298400	Strong transcription	Primary T helper cells fromperipheralblood	blood
43	chr15:41291600-41301200	Strong transcription	Primary T helper cells PMA-I stimulated	--
44	chr15:41292200-41299800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr15:41292400-41296000	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr15:41292600-41296800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr15:41292800-41296000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr15:41292800-41296200	Weak transcription	Ovary	ovary
49	chr15:41293000-41296000	Weak transcription	Stomach Smooth Muscle	stomach
50	chr15:41293000-41296800	Weak transcription	Thymus	Thymus

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