Variant report

Variant	rs58064468
Chromosome Location	chr15:41268716-41268717
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:41265403..41268929-chr15:41273449..41275807,3	MCF-7	breast:
2	chr15:41220311..41223112-chr15:41267021..41268787,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000128908	Chromatin interaction
ENSG00000128917	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11070319	1.00[EUR][1000 genomes]
rs13380088	1.00[AMR][1000 genomes]
rs16971263	1.00[EUR][1000 genomes]
rs16971413	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3101435	1.00[EUR][1000 genomes]
rs57802780	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57859748	0.90[AMR][1000 genomes]
rs58367898	1.00[AMR][1000 genomes]
rs58653174	1.00[AMR][1000 genomes]
rs59935357	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60036819	0.80[AMR][1000 genomes]
rs60866613	0.91[AMR][1000 genomes]
rs6492975	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7162394	0.91[AMR][1000 genomes]
rs7165020	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7170945	1.00[AMR][1000 genomes]
rs7174426	1.00[AMR][1000 genomes]
rs73385890	1.00[AMR][1000 genomes]
rs73385892	1.00[AMR][1000 genomes]
rs73399681	0.80[AMR][1000 genomes]
rs73399694	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8031345	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8034461	1.00[EUR][1000 genomes]
rs8040425	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904101	chr15:40979651-41275014	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv904103	chr15:41123172-41275014	Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv904105	chr15:41149824-41275014	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
4	esv1794127	chr15:41245289-41276158	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41246600-41270000	Weak transcription	HUVEC	blood vessel
2	chr15:41252400-41269400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr15:41252800-41270800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:41253600-41268800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr15:41253600-41268800	Weak transcription	Right Ventricle	heart
6	chr15:41258800-41268800	Weak transcription	Pancreas	Pancrea
7	chr15:41258800-41270400	Weak transcription	Rectal Smooth Muscle	rectum
8	chr15:41258800-41270800	Weak transcription	Psoas Muscle	Psoas
9	chr15:41258800-41348400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr15:41259400-41268800	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr15:41260800-41268800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr15:41261200-41269400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr15:41261800-41268800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr15:41262000-41271400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr15:41264000-41275400	Weak transcription	Fetal Brain Male	brain
16	chr15:41264600-41271800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr15:41264800-41269600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr15:41264800-41269800	Weak transcription	K562	blood
19	chr15:41265000-41269200	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr15:41265200-41269200	Weak transcription	HepG2	liver
21	chr15:41265400-41268800	Weak transcription	Hela-S3	cervix
22	chr15:41265400-41269400	Weak transcription	Fetal Lung	lung
23	chr15:41265400-41271600	Weak transcription	Stomach Mucosa	stomach
24	chr15:41266000-41268800	Weak transcription	Primary B cells from cord blood	blood
25	chr15:41266000-41274200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr15:41266200-41275000	Strong transcription	Fetal Muscle Trunk	muscle
27	chr15:41266600-41268800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr15:41266600-41274000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr15:41266600-41275000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr15:41266800-41273800	Strong transcription	Muscle Satellite Cultured Cells	--
31	chr15:41266800-41274000	Strong transcription	Osteobl	bone
32	chr15:41266800-41275200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr15:41266800-41277400	Strong transcription	Fetal Muscle Leg	muscle
34	chr15:41266800-41278400	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr15:41266800-41280200	Strong transcription	Fetal Brain Female	brain
36	chr15:41266800-41280400	Strong transcription	Brain Substantia Nigra	brain
37	chr15:41266800-41281400	Strong transcription	Primary T cells fromperipheralblood	blood
38	chr15:41266800-41283800	Strong transcription	A549	lung
39	chr15:41266800-41290000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr15:41266800-41298400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr15:41267000-41268800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr15:41267000-41270000	Weak transcription	Primary hematopoietic stem cells	blood
43	chr15:41267000-41280600	Strong transcription	Cortex derived primary cultured neurospheres	brain
44	chr15:41267000-41280800	Strong transcription	Brain Germinal Matrix	brain
45	chr15:41267200-41270200	Weak transcription	NHDF-Ad	bronchial
46	chr15:41267200-41272600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr15:41267200-41294800	Strong transcription	Primary T cells from cord blood	blood
48	chr15:41267600-41268800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr15:41267600-41270000	Weak transcription	GM12878-XiMat	blood
50	chr15:41267600-41280600	Strong transcription	Fetal Stomach	stomach

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