Variant report

Variant	rs58367898
Chromosome Location	chr15:41296399-41296400
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:41291439..41293905-chr15:41294966..41297469,2	K562	blood:
2	chr15:41244035..41246636-chr15:41295482..41297354,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259617	Chromatin interaction
ENSG00000128965	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs13380088	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16971413	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57802780	1.00[AMR][1000 genomes]
rs57859748	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58064468	1.00[AMR][1000 genomes]
rs58653174	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59935357	1.00[AMR][1000 genomes]
rs60036819	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs60866613	0.91[AMR][1000 genomes]
rs6492975	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs7162394	0.91[AMR][1000 genomes]
rs7165020	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7170945	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7174426	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7178308	1.00[EUR][1000 genomes]
rs73385890	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73385892	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73399657	1.00[EUR][1000 genomes]
rs73399681	0.95[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73399694	0.80[AMR][1000 genomes]
rs73401688	0.85[AFR][1000 genomes]
rs73401700	0.87[AFR][1000 genomes]
rs8031345	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8040425	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053462	chr15:41270067-41396094	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41258800-41348400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:41266800-41298400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr15:41267600-41301200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr15:41267800-41301400	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr15:41268000-41298000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:41268000-41302400	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr15:41276600-41354600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:41276800-41305200	Weak transcription	Fetal Brain Male	brain
9	chr15:41279800-41298200	Weak transcription	Fetal Heart	heart
10	chr15:41280200-41306600	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr15:41280400-41339800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr15:41284400-41301600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr15:41285800-41298600	Strong transcription	Dnd41	blood
14	chr15:41286000-41298000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr15:41286000-41298200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr15:41286000-41299000	Strong transcription	Primary B cells from cord blood	blood
17	chr15:41286400-41298000	Strong transcription	Fetal Stomach	stomach
18	chr15:41287200-41301000	Strong transcription	HUES64 Cell Line	embryonic stem cell
19	chr15:41288200-41307400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr15:41288200-41309800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr15:41289000-41300200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr15:41289000-41300600	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr15:41289200-41306800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr15:41289400-41307000	Weak transcription	Colonic Mucosa	Colon
25	chr15:41289600-41299800	Weak transcription	Brain Substantia Nigra	brain
26	chr15:41289800-41296600	Weak transcription	Spleen	Spleen
27	chr15:41289800-41307800	Weak transcription	Rectal Smooth Muscle	rectum
28	chr15:41289800-41310600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr15:41290000-41296600	Weak transcription	Brain Germinal Matrix	brain
30	chr15:41290000-41308200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr15:41290200-41310600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr15:41291400-41298400	Strong transcription	Primary T helper cells fromperipheralblood	blood
33	chr15:41291600-41301200	Strong transcription	Primary T helper cells PMA-I stimulated	--
34	chr15:41292200-41299800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr15:41292600-41296800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr15:41293000-41296800	Weak transcription	Thymus	Thymus
37	chr15:41293000-41300000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr15:41293400-41297200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr15:41293800-41300800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
40	chr15:41293800-41308400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr15:41294000-41297400	Strong transcription	Duodenum Smooth Muscle	Duodenum
42	chr15:41294000-41297600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr15:41294000-41303200	Weak transcription	Stomach Mucosa	stomach
44	chr15:41294000-41308200	Weak transcription	Gastric	stomach
45	chr15:41294000-41310600	Weak transcription	Psoas Muscle	Psoas
46	chr15:41294000-41313000	Weak transcription	Esophagus	oesophagus
47	chr15:41294000-41314600	Weak transcription	Aorta	Aorta
48	chr15:41294000-41316600	Weak transcription	Pancreas	Pancrea
49	chr15:41294200-41296600	Weak transcription	HepG2	liver
50	chr15:41294200-41299800	Weak transcription	NHLF	lung

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