Variant report

Variant	rs7174426
Chromosome Location	chr15:41292871-41292872
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:41231312..41233017-chr15:41292337..41294409,2	MCF-7	breast:
2	chr15:41231280..41234394-chr15:41292861..41295820,3	K562	blood:
3	chr15:41292088..41294732-chr15:41407078..41409058,2	K562	blood:
4	chr15:41220148..41223426-chr15:41291682..41295350,3	K562	blood:
5	chr15:41292493..41293995-chr15:41521560..41523470,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000187446	Chromatin interaction
ENSG00000128917	Chromatin interaction
ENSG00000128908	Chromatin interaction
ENSG00000178997	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs13380088	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16971413	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57802780	1.00[AMR][1000 genomes]
rs57859748	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58064468	1.00[AMR][1000 genomes]
rs58367898	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58653174	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59935357	1.00[AMR][1000 genomes]
rs60036819	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs60866613	0.91[AMR][1000 genomes]
rs6492975	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs7162394	0.91[AMR][1000 genomes]
rs7165020	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7170945	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7178308	1.00[EUR][1000 genomes]
rs73385890	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73385892	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73399657	1.00[EUR][1000 genomes]
rs73399681	0.95[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73399694	0.80[AMR][1000 genomes]
rs73401688	0.85[AFR][1000 genomes]
rs73401700	0.87[AFR][1000 genomes]
rs8031345	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8040425	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053462	chr15:41270067-41396094	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41258800-41348400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:41266800-41298400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr15:41267200-41294800	Strong transcription	Primary T cells from cord blood	blood
4	chr15:41267600-41294200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr15:41267600-41301200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr15:41267800-41294200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
7	chr15:41267800-41301400	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr15:41268000-41294800	Strong transcription	Fetal Thymus	thymus
9	chr15:41268000-41298000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr15:41268000-41302400	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr15:41268200-41295000	Strong transcription	Primary B cells from peripheral blood	blood
12	chr15:41276200-41296000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr15:41276600-41354600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr15:41276800-41293600	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr15:41276800-41305200	Weak transcription	Fetal Brain Male	brain
16	chr15:41278000-41294800	Strong transcription	Fetal Muscle Leg	muscle
17	chr15:41279600-41293400	Weak transcription	Small Intestine	intestine
18	chr15:41279600-41293400	Weak transcription	Stomach Mucosa	stomach
19	chr15:41279800-41298200	Weak transcription	Fetal Heart	heart
20	chr15:41280200-41293600	Weak transcription	Aorta	Aorta
21	chr15:41280200-41306600	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr15:41280400-41339800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr15:41282400-41295200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr15:41282600-41293400	Strong transcription	Left Ventricle	heart
25	chr15:41284400-41301600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr15:41285800-41298600	Strong transcription	Dnd41	blood
27	chr15:41286000-41294000	Strong transcription	HUES6 Cell Line	embryonic stem cell
28	chr15:41286000-41294400	Strong transcription	Fetal Lung	lung
29	chr15:41286000-41298000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr15:41286000-41298200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr15:41286000-41299000	Strong transcription	Primary B cells from cord blood	blood
32	chr15:41286200-41293600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr15:41286200-41293600	Strong transcription	Adipose Nuclei	Adipose
34	chr15:41286200-41293800	Strong transcription	HSMMtube	muscle
35	chr15:41286200-41294000	Strong transcription	HSMM	muscle
36	chr15:41286200-41294800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
37	chr15:41286200-41294800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr15:41286400-41293200	Strong transcription	Fetal Intestine Large	intestine
39	chr15:41286400-41298000	Strong transcription	Fetal Stomach	stomach
40	chr15:41287200-41301000	Strong transcription	HUES64 Cell Line	embryonic stem cell
41	chr15:41287400-41293000	Strong transcription	Duodenum Smooth Muscle	Duodenum
42	chr15:41288200-41307400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr15:41288200-41309800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr15:41288400-41296000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr15:41288400-41296000	Weak transcription	K562	blood
46	chr15:41289000-41296000	Weak transcription	Right Ventricle	heart
47	chr15:41289000-41300200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr15:41289000-41300600	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr15:41289200-41306800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr15:41289400-41293400	Weak transcription	Gastric	stomach

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