Variant report

Variant	rs57802780
Chromosome Location	chr15:41263899-41263900
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:41230059..41232086-chr15:41262058..41264861,2	MCF-7	breast:
2	chr15:41260659..41262903-chr15:41262940..41265797,2	K562	blood:
3	chr15:41251504..41254732-chr15:41263210..41265996,3	K562	blood:
4	chr15:41232946..41236246-chr15:41262141..41265286,3	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs13380088	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16971413	1.00[AMR][1000 genomes]
rs57859748	0.90[AMR][1000 genomes]
rs58064468	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58367898	1.00[AMR][1000 genomes]
rs58653174	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59935357	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60036819	0.80[AMR][1000 genomes]
rs60866613	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs6492975	0.80[AMR][1000 genomes]
rs7162394	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7165020	1.00[AMR][1000 genomes]
rs7170945	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7174426	1.00[AMR][1000 genomes]
rs73385890	1.00[AMR][1000 genomes]
rs73385892	1.00[AMR][1000 genomes]
rs73399681	0.80[AMR][1000 genomes]
rs73399694	0.80[AMR][1000 genomes]
rs8031345	1.00[AMR][1000 genomes]
rs8040425	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904101	chr15:40979651-41275014	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv904103	chr15:41123172-41275014	Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv904105	chr15:41149824-41275014	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
4	esv1794127	chr15:41245289-41276158	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41246400-41268200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr15:41246600-41270000	Weak transcription	HUVEC	blood vessel
3	chr15:41246800-41268000	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr15:41246800-41268200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr15:41249400-41266000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr15:41249400-41268000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr15:41250000-41264400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr15:41252400-41269400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr15:41252800-41270800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr15:41253600-41268200	Weak transcription	Spleen	Spleen
11	chr15:41253600-41268800	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr15:41253600-41268800	Weak transcription	Right Ventricle	heart
13	chr15:41258600-41267600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr15:41258600-41268000	Weak transcription	Fetal Intestine Small	intestine
15	chr15:41258800-41264400	Weak transcription	K562	blood
16	chr15:41258800-41265200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr15:41258800-41266800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr15:41258800-41266800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr15:41258800-41267200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr15:41258800-41267800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr15:41258800-41267800	Weak transcription	Lung	lung
22	chr15:41258800-41267800	Weak transcription	Ovary	ovary
23	chr15:41258800-41268000	Weak transcription	Colonic Mucosa	Colon
24	chr15:41258800-41268000	Weak transcription	Left Ventricle	heart
25	chr15:41258800-41268000	Weak transcription	Stomach Smooth Muscle	stomach
26	chr15:41258800-41268200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr15:41258800-41268600	Weak transcription	Brain Hippocampus Middle	brain
28	chr15:41258800-41268800	Weak transcription	Pancreas	Pancrea
29	chr15:41258800-41270400	Weak transcription	Rectal Smooth Muscle	rectum
30	chr15:41258800-41270800	Weak transcription	Psoas Muscle	Psoas
31	chr15:41258800-41348400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr15:41259000-41264200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr15:41259000-41268000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr15:41259000-41268000	Weak transcription	Liver	Liver
35	chr15:41259200-41266800	Weak transcription	Fetal Muscle Leg	muscle
36	chr15:41259200-41268200	Weak transcription	NHLF	lung
37	chr15:41259400-41266600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr15:41259400-41267000	Weak transcription	Brain Germinal Matrix	brain
39	chr15:41259400-41267800	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr15:41259400-41268000	Weak transcription	Colon Smooth Muscle	Colon
41	chr15:41259400-41268000	Weak transcription	HSMMtube	muscle
42	chr15:41259400-41268800	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr15:41259600-41264600	Weak transcription	Fetal Lung	lung
44	chr15:41259600-41268000	Weak transcription	Fetal Kidney	kidney
45	chr15:41260000-41266800	Weak transcription	Placenta	Placenta
46	chr15:41260800-41264400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr15:41260800-41268200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr15:41260800-41268800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr15:41261000-41264400	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr15:41261000-41267000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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