Variant report

Variant	rs58653174
Chromosome Location	chr15:41266116-41266117
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:41264244..41266968-chr15:41278240..41280821,2	MCF-7	breast:
2	chr15:41265403..41268929-chr15:41273449..41275807,3	MCF-7	breast:
3	chr15:41264586..41267497-chr15:41281523..41283917,2	MCF-7	breast:
4	chr15:41265160..41268430-chr15:41271742..41276727,5	K562	blood:

Variant related genes	Relation type
ENSG00000128908	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs13380088	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16971413	1.00[AMR][1000 genomes]
rs57802780	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57859748	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58064468	1.00[AMR][1000 genomes]
rs58367898	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59935357	1.00[AMR][1000 genomes]
rs60036819	0.80[AMR][1000 genomes]
rs60866613	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs6492975	0.80[AMR][1000 genomes]
rs7162394	0.91[AMR][1000 genomes]
rs7165020	1.00[AMR][1000 genomes]
rs7170945	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7174426	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7178308	1.00[EUR][1000 genomes]
rs73385890	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73385892	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73399657	1.00[EUR][1000 genomes]
rs73399681	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73399694	0.80[AMR][1000 genomes]
rs8031345	1.00[AMR][1000 genomes]
rs8040425	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904101	chr15:40979651-41275014	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv904103	chr15:41123172-41275014	Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv904105	chr15:41149824-41275014	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
4	esv1794127	chr15:41245289-41276158	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41246400-41268200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr15:41246600-41270000	Weak transcription	HUVEC	blood vessel
3	chr15:41246800-41268000	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr15:41246800-41268200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr15:41249400-41268000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr15:41252400-41269400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr15:41252800-41270800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:41253600-41268200	Weak transcription	Spleen	Spleen
9	chr15:41253600-41268800	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr15:41253600-41268800	Weak transcription	Right Ventricle	heart
11	chr15:41258600-41267600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr15:41258600-41268000	Weak transcription	Fetal Intestine Small	intestine
13	chr15:41258800-41266800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr15:41258800-41266800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr15:41258800-41267200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr15:41258800-41267800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr15:41258800-41267800	Weak transcription	Lung	lung
18	chr15:41258800-41267800	Weak transcription	Ovary	ovary
19	chr15:41258800-41268000	Weak transcription	Colonic Mucosa	Colon
20	chr15:41258800-41268000	Weak transcription	Left Ventricle	heart
21	chr15:41258800-41268000	Weak transcription	Stomach Smooth Muscle	stomach
22	chr15:41258800-41268200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr15:41258800-41268600	Weak transcription	Brain Hippocampus Middle	brain
24	chr15:41258800-41268800	Weak transcription	Pancreas	Pancrea
25	chr15:41258800-41270400	Weak transcription	Rectal Smooth Muscle	rectum
26	chr15:41258800-41270800	Weak transcription	Psoas Muscle	Psoas
27	chr15:41258800-41348400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr15:41259000-41268000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr15:41259000-41268000	Weak transcription	Liver	Liver
30	chr15:41259200-41266800	Weak transcription	Fetal Muscle Leg	muscle
31	chr15:41259200-41268200	Weak transcription	NHLF	lung
32	chr15:41259400-41266600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr15:41259400-41267000	Weak transcription	Brain Germinal Matrix	brain
34	chr15:41259400-41267800	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr15:41259400-41268000	Weak transcription	Colon Smooth Muscle	Colon
36	chr15:41259400-41268000	Weak transcription	HSMMtube	muscle
37	chr15:41259400-41268800	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr15:41259600-41268000	Weak transcription	Fetal Kidney	kidney
39	chr15:41260000-41266800	Weak transcription	Placenta	Placenta
40	chr15:41260800-41268200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr15:41260800-41268800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr15:41261000-41267000	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr15:41261200-41269400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr15:41261800-41268000	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr15:41261800-41268000	Weak transcription	Duodenum Mucosa	Duodenum
46	chr15:41261800-41268800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr15:41262000-41268000	Weak transcription	Primary neutrophils fromperipheralblood	blood
48	chr15:41262000-41271400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr15:41262800-41266800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr15:41263400-41266200	Weak transcription	Fetal Muscle Trunk	muscle

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