Variant report

Variant	rs8034461
Chromosome Location	chr15:41299919-41299920
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:41220305..41222462-chr15:41298585..41300248,2	K562	blood:

Variant related genes	Relation type
ENSG00000128917	Chromatin interaction

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10152296	0.94[AMR][1000 genomes]
rs11070319	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11070320	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs11630905	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16971263	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16971413	1.00[EUR][1000 genomes]
rs16971463	0.94[AMR][1000 genomes]
rs28455970	0.94[AMR][1000 genomes]
rs28528813	0.83[AMR][1000 genomes]
rs2899010	0.94[AMR][1000 genomes]
rs2925348	1.00[AMR][1000 genomes]
rs2925349	0.94[AMR][1000 genomes]
rs2927067	0.84[AMR][1000 genomes]
rs2928147	0.94[AMR][1000 genomes]
rs2928149	0.94[AMR][1000 genomes]
rs2928150	0.94[AMR][1000 genomes]
rs2928154	0.94[AMR][1000 genomes]
rs2947492	1.00[AMR][1000 genomes]
rs2947495	0.83[AMR][1000 genomes]
rs2947496	1.00[AMR][1000 genomes]
rs2955812	0.94[AMR][1000 genomes]
rs3101435	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3101438	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs3101441	1.00[AMR][1000 genomes]
rs4468583	0.94[AMR][1000 genomes]
rs474351	0.94[AMR][1000 genomes]
rs480549	0.94[AMR][1000 genomes]
rs487779	0.94[AMR][1000 genomes]
rs4923894	0.94[AMR][1000 genomes]
rs4923895	0.89[AMR][1000 genomes]
rs4924533	0.94[AFR][1000 genomes]
rs4924534	0.94[AMR][1000 genomes]
rs496499	0.94[AMR][1000 genomes]
rs513680	0.94[AMR][1000 genomes]
rs518137	0.94[AMR][1000 genomes]
rs525551	0.94[AMR][1000 genomes]
rs538903	1.00[AMR][1000 genomes]
rs56955512	0.94[AMR][1000 genomes]
rs57008457	1.00[AMR][1000 genomes]
rs57385441	0.94[AMR][1000 genomes]
rs58064468	1.00[EUR][1000 genomes]
rs58142514	1.00[AMR][1000 genomes]
rs59405359	1.00[AMR][1000 genomes]
rs59935357	1.00[EUR][1000 genomes]
rs6492975	1.00[EUR][1000 genomes]
rs690773	0.94[AMR][1000 genomes]
rs691069	0.94[AMR][1000 genomes]
rs691722	0.94[AMR][1000 genomes]
rs692703	1.00[AMR][1000 genomes]
rs7162003	1.00[AMR][1000 genomes]
rs7165020	1.00[EUR][1000 genomes]
rs7167166	0.94[AMR][1000 genomes]
rs7172555	0.94[AMR][1000 genomes]
rs7173146	0.94[AMR][1000 genomes]
rs7174513	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs7183191	1.00[AMR][1000 genomes]
rs73399092	0.94[AMR][1000 genomes]
rs73399694	1.00[EUR][1000 genomes]
rs8031345	1.00[EUR][1000 genomes]
rs8032956	0.94[AMR][1000 genomes]
rs8035532	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs8043232	0.83[AMR][1000 genomes]
rs9806344	0.94[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053462	chr15:41270067-41396094	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41258800-41348400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:41267600-41301200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr15:41267800-41301400	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr15:41268000-41302400	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr15:41276600-41354600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:41276800-41305200	Weak transcription	Fetal Brain Male	brain
7	chr15:41280200-41306600	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr15:41280400-41339800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr15:41284400-41301600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr15:41287200-41301000	Strong transcription	HUES64 Cell Line	embryonic stem cell
11	chr15:41288200-41307400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr15:41288200-41309800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr15:41289000-41300200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr15:41289000-41300600	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr15:41289200-41306800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr15:41289400-41307000	Weak transcription	Colonic Mucosa	Colon
17	chr15:41289800-41307800	Weak transcription	Rectal Smooth Muscle	rectum
18	chr15:41289800-41310600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr15:41290000-41308200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr15:41290200-41310600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr15:41291600-41301200	Strong transcription	Primary T helper cells PMA-I stimulated	--
22	chr15:41293000-41300000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr15:41293800-41300800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
24	chr15:41293800-41308400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr15:41294000-41303200	Weak transcription	Stomach Mucosa	stomach
26	chr15:41294000-41308200	Weak transcription	Gastric	stomach
27	chr15:41294000-41310600	Weak transcription	Psoas Muscle	Psoas
28	chr15:41294000-41313000	Weak transcription	Esophagus	oesophagus
29	chr15:41294000-41314600	Weak transcription	Aorta	Aorta
30	chr15:41294000-41316600	Weak transcription	Pancreas	Pancrea
31	chr15:41294200-41306200	Weak transcription	Fetal Kidney	kidney
32	chr15:41294200-41316800	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr15:41294800-41303200	Weak transcription	Small Intestine	intestine
34	chr15:41295800-41300400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr15:41295800-41302400	Strong transcription	Fetal Muscle Leg	muscle
36	chr15:41295800-41306000	Strong transcription	Primary B cells from peripheral blood	blood
37	chr15:41296000-41302000	Strong transcription	Placenta	Placenta
38	chr15:41296000-41302400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
39	chr15:41296000-41310200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr15:41296000-41315600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr15:41296200-41300000	Strong transcription	Hela-S3	cervix
42	chr15:41296400-41308200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr15:41296400-41308200	Weak transcription	Right Ventricle	heart
44	chr15:41296600-41300600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr15:41296600-41306200	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr15:41296800-41303600	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr15:41297000-41300000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr15:41297000-41302600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr15:41297000-41303200	Weak transcription	NHEK	skin
50	chr15:41297000-41306400	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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