Variant report

Variant	rs2947495
Chromosome Location	chr15:41420011-41420012
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10152296	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs11070319	0.83[AMR][1000 genomes]
rs11070320	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs11630905	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs16971463	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs28455970	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2899010	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2925348	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2925349	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2928147	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2928149	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2928150	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2928154	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2947492	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2947496	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2955812	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs3101438	0.89[AMR][1000 genomes]
rs3101441	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4468583	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs474351	0.90[AFR][1000 genomes]
rs480549	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs487779	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs4923894	0.89[AMR][1000 genomes]
rs4923895	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs4924534	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs496499	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs513680	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs518137	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs525551	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs538903	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs56955512	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs57008457	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs57385441	0.89[AMR][1000 genomes]
rs58142514	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs59405359	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs690773	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs691069	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs691722	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs692703	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7162003	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7167166	0.89[AMR][1000 genomes]
rs7172555	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7173146	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7174513	0.89[AMR][1000 genomes]
rs7183191	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73399092	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs8032956	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs8034461	0.83[AMR][1000 genomes]
rs8035532	0.89[AMR][1000 genomes]
rs9806344	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569229	chr15:41361138-41483682	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
2	nsv904107	chr15:41361138-41493013	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv569230	chr15:41384649-41483682	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	nsv904108	chr15:41384649-41486990	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
5	nsv904109	chr15:41410705-41481254	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv457120	chr15:41410705-41546631	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv569231	chr15:41410705-41546631	Weak transcription ZNF genes & repeats Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41409600-41427600	Weak transcription	Hela-S3	cervix
2	chr15:41418400-41423200	Weak transcription	Stomach Mucosa	stomach
3	chr15:41418800-41420200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr15:41418800-41420600	Weak transcription	Fetal Intestine Large	intestine
5	chr15:41419000-41420600	Weak transcription	A549	lung
6	chr15:41419000-41421600	Enhancers	HepG2	liver
7	chr15:41419600-41421800	Enhancers	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links