Variant report

Variant	rs7173146
Chromosome Location	chr15:41333147-41333148
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10152296	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11070319	0.94[ASW][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes]
rs11070320	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11630905	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs16971263	0.82[ASW][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.83[AMR][1000 genomes]
rs16971264	1.00[MEX][hapmap]
rs16971413	1.00[TSI][hapmap]
rs16971463	0.94[ASW][hapmap];1.00[GIH][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16971507	1.00[MEX][hapmap]
rs2007255	1.00[GIH][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.89[YRI][hapmap];0.84[AMR][1000 genomes]
rs2412573	0.86[YRI][hapmap]
rs2412599	1.00[GIH][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2412600	1.00[GIH][hapmap];0.81[LWK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs28455970	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28528813	0.89[AMR][1000 genomes]
rs2899010	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2925344	1.00[MEX][hapmap]
rs2925348	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs2925349	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2927067	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2928147	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2928149	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2928150	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2928154	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2947492	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs2947495	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2947496	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs2955812	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3101435	0.96[YRI][hapmap];0.83[AMR][1000 genomes]
rs3101438	0.94[ASW][hapmap];1.00[GIH][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3101440	1.00[MEX][hapmap]
rs3101441	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs4468583	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs474351	0.94[ASW][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs480549	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs487779	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4923894	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4923895	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs4924533	0.94[ASW][hapmap];1.00[GIH][hapmap];0.95[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes]
rs4924534	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs496499	0.94[ASW][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs513680	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs518137	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs525551	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs538903	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs56955512	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57008457	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs57385441	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58142514	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs59405359	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs690773	0.94[ASW][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs691069	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs691722	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs692703	0.94[AMR][1000 genomes]
rs7162003	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs7167166	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7169092	1.00[MEX][hapmap]
rs7172555	0.94[ASW][hapmap];1.00[GIH][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7174223	1.00[EUR][1000 genomes]
rs7174513	0.94[ASW][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7183191	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs73399092	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8030958	1.00[MEX][hapmap]
rs8032956	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8034461	0.94[AMR][1000 genomes]
rs8035532	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8043232	0.82[ASW][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.89[AMR][1000 genomes]
rs9806344	0.94[ASW][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9806730	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053462	chr15:41270067-41396094	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41258800-41348400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:41276600-41354600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:41280400-41339800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr15:41306800-41338800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr15:41307600-41335000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr15:41308800-41337000	Weak transcription	Colonic Mucosa	Colon
7	chr15:41309000-41339200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr15:41310000-41333200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr15:41310000-41333400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr15:41311400-41335400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr15:41313400-41333200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr15:41313400-41336000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr15:41313400-41336200	Weak transcription	Brain Substantia Nigra	brain
14	chr15:41314000-41335600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr15:41318400-41334400	Weak transcription	Small Intestine	intestine
16	chr15:41319400-41335000	Weak transcription	Brain Germinal Matrix	brain
17	chr15:41319400-41339800	Weak transcription	Psoas Muscle	Psoas
18	chr15:41319600-41335000	Weak transcription	A549	lung
19	chr15:41319600-41337000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr15:41320000-41337000	Weak transcription	Esophagus	oesophagus
21	chr15:41320000-41337200	Weak transcription	Colon Smooth Muscle	Colon
22	chr15:41320600-41339400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr15:41324400-41350400	Weak transcription	Pancreas	Pancrea
24	chr15:41325600-41333600	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr15:41325600-41354000	Strong transcription	Primary B cells from peripheral blood	blood
26	chr15:41325800-41354000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr15:41327600-41339200	Weak transcription	Stomach Mucosa	stomach
28	chr15:41327800-41350800	Weak transcription	Aorta	Aorta
29	chr15:41328400-41353200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr15:41328800-41388600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr15:41329400-41353000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr15:41329800-41335000	Strong transcription	Fetal Stomach	stomach
33	chr15:41329800-41353400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
34	chr15:41330000-41351600	Strong transcription	Primary T cells from cord blood	blood
35	chr15:41330200-41353400	Strong transcription	Primary monocytes fromperipheralblood	blood
36	chr15:41330200-41354000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr15:41330400-41333600	Strong transcription	GM12878-XiMat	blood
38	chr15:41330400-41334000	Strong transcription	Osteobl	bone
39	chr15:41330400-41335800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr15:41330400-41344000	Strong transcription	Hela-S3	cervix
41	chr15:41330400-41352400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr15:41330400-41352800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
43	chr15:41330400-41353000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr15:41330400-41353000	Strong transcription	Dnd41	blood
45	chr15:41330400-41354000	Strong transcription	Monocytes-CD14+_RO01746	blood
46	chr15:41330400-41354400	Strong transcription	Fetal Muscle Trunk	muscle
47	chr15:41330600-41333200	Strong transcription	Primary T helper cells PMA-I stimulated	--
48	chr15:41330600-41333600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr15:41330600-41352800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr15:41330600-41353200	Strong transcription	iPS-18 Cell Line	embryonic stem cell

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